DreINT0116604 @ danRer10
Intron Retention
Gene
ENSDARG00000102607 | pmpca
Description
peptidase (mitochondrial processing) alpha [Source:ZFIN;Acc:ZDB-GENE-030131-5809]
Coordinates
chr5:64361258-64363640:+
Coord C1 exon
chr5:64361258-64361521
Coord A exon
chr5:64361522-64363547
Coord C2 exon
chr5:64363548-64363640
Length
2026 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATCTTATTGTGTGCTGTCAGATG
3' ss Score
7.78
Exon sequences
Seq C1 exon
GCCGCATACAGGGGCAACACCGTAGGCCTGCCGCGCTTCAGCCCTGCTGACAATGTGGAGAAGATCGACAAGAAGCTGCTTCACAAGTACCTGCAGAGCTATTACTGCCCGGAGAGAATGGTGCTGGCCGGCGTCGGCATCGAACACGAGCAGCTGGTTCAGTGCGCCAGAAAATATCTCCTGAATGTTCAGCCAGTGTGGGGCGAGAGCAAGCCTGCCAACGTCGACCGCTCTGTGGCACAATATACGGGTGGCATCGTAAAG
Seq A exon
GTGAGAGGGGTTCTGAGACCAACAGACATTGTTAAATACAGGGTTTCCATGCTTAATGAAGTGTTCTGGAGTTCCTATGGTTAAATAAATAAAATGTTTGTGTGTTTTTATGTGAAATAACACAATCATACACATGGCAATTCGGAACTTTTTGATTTAGTGGCTAATTCATATGATCTCATTCGGAAAATTCACTACGATTTGCTCATCTCCTAATGACGGTTGGGTATGACTGAACTCGTACAGTTTAGCTAATAAACAGACATAAAGCAAAATATTTATGTTTCCTTGTGAGATCAGGCTGGAAACAGTTATGATCAGCAGTCTGACTCTGATTTGAGGTGAAATGCTAATGTTTTTATAAATTGTTAATATTGCAGCATGTCTCTTCGTTGTTTCCAATCATCTTACCATATAGTTTCTCTCAGCTGCATATTTTCTTTTAAAATATGTAGATAATATTTCATTGTGAAAGCTGTTTCTTTCTTTTATTCATTCATTTTCTATTCAGCTTAGTGCCTTCATTAATCTGGGGTCGCCACAGCAAAATGAACTGTCGCTGTTTCTTTCAATGTCAGATTATTTTACACTCATGCATTGTTAAATGTTTAACATTATTGATATGTTTAACCCTTTTTTAATTACTTAAAATTTAAGGAATTCTTTCAAATTGAAATCTTTAATAGGAACTACAACAAATATGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGAAGAAAGAGTACAGTTAAACGCAACAATTCTATTGTTCAGAAATTATTTATTTTTTAGATATTTCCCAAGTGATGTTTAATAGAGCAAGGACATTTTTCACAGTATTTTTTAATGTTTTTTTTTTCTGGAGAGAATTGTTTGTTGGAATTAATCAGTATAAAATTGTTTTAAAAGATTTTGTAATGGTTAATATTAGTAAAGAAAATCTTTTTTTGATAGTCTACAGAACAAACCACTGCTATATAATGACTTGCCTAATTACCCTAACTTGCCTAGTTAACCTAATAGACCCAGTCAAACCTTTAAAATGGCACTTGGAGATAAATACTAGTATCTTGCAAAAAAACACCACTGTAGATCCCAAAAAGTTATGGTAACTCAAACTATTTGAAGAAACTGATTGCTACAAACCATTTAAGTTCAAAAACTAATCCTAATGAGTACTGTGAACTTAATCCATTTGAGTAAATGAAGCAATTTGAGCACAGTAAAACCCAATAAATGAAGAGAACTCAAACCAATTGAGTACTGTAAAACCCAATTAGTTAAGGCAAGTCAAACCGTTTAAGGTAACCGATTGCCACAAAAAAAAAAAAAAATACTAATACTACTAATACTTTCCTTCTTAGACTTTACAGACCTGAAACTTGCCTATAGCACTTATTCATTGTTGCTCTTAGTTGTGTAAATTGCTTCCTTGTCCTCATTTGTAAGTCGCTTTGGATAAAAGCGTCTGCTAAATGACTAAATGTGAATCGTTTGAGTTAAGAAACTAATCCATGAGTATAATGAGGTATTTAATTAACTCTTTACCTTCAACACTGAGTTCAAAACTCTTTTCACATGAGTAGAATTAACTTTCAGTACATTTTGAGTTAACTACACTCATTTCATTAGATAAAGTTGACTGTTGGGTTTAACAGTGTACTAAAATATTGTCATCAAGGCCCTGACAACCCCTACTGTTTATGGTTTTTGTAACCAATAAAGTCACTTAATTGTAAATTCTTTTATATAAATATTTTTATTTCTTGTACAGTTAAAAAAGTCAACAGTGCACATATTGCACATAAACCATCTCTATATTATTTGTATTGTTTACTTTATTTTCTACTTATTTAAATGTCATTGTGTGTTCTTGTGTTGATATTTATGCATGTACTGTATGTACCCTGAGCTCCTGAAAAAAAGACCCACAAATTTGCACACACTTGGTGAATAAAGCTCCTGATTCTGATTCTAATCTTATTGTGTGCTGTCAG
Seq C2 exon
ATGGTGAAGGACATGTCTGATGTGAGTTTGGGTCCAACACCCATTCCTGAACTCACACACATCATGATCGGGCTGGAGAGCTGCTCCTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102607:ENSDART00000164278:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=PD(9.9=17.0),PF0519316=Peptidase_M16_C=PU(33.5=76.1)
A:
NA
C2:
PF0519316=Peptidase_M16_C=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]