DreINT0120740 @ danRer10
Intron Retention
Gene
ENSDARG00000057583 | prrc2c
Description
proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
Coordinates
chr20:15160215-15163158:-
Coord C1 exon
chr20:15162989-15163158
Coord A exon
chr20:15160393-15162988
Coord C2 exon
chr20:15160215-15160392
Length
2596 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTTTTTCGCCTTCTTTTAGTTG
3' ss Score
9.2
Exon sequences
Seq C1 exon
GGGCTGGTTCTGAGGGGTGAGGCCGCAGGACCAGACTCAATGAGTTTCCAGCGAAATGTCCGAGAAGTCAGGGCAGAGCACCAAGGCAAAGGATGGCAAGACCAAGTATGCAACCCTTAGCCTCTTCAACACGTACAAGGGAAAGTCTTTGGAGACGCAGAAAACTGCAG
Seq A exon
GTGAGTCCAGCTAATCATTCTCACACACAAGCTGATTTAAATCATCTCAAAATTGAAAGCTCTGAACCACATTATTACAAGAAAGTGAAGAGAATGCAAAGAAAGTAGATGTATTATTTAACGTCATGAAATACAGACTTTTTATTTGGGGTTGAAAAGTAATCTTGTCACTTTTGTAGCTAGAGTAAAGGCTGGCGTACAGGGTGCCATTTTTGCCTGTCATTGGAGCTTGTACGAAAATTTTTCTTCTCCACTGAGACAATTTATGTGGAAATCGCTGATGGTCGTATTGTGTGAAAGCAATTTGCGAGCTGATAAAAATGGCTCATGAGCTTCTGATCATTAAAAAAACAGCAGCCATTGGGTTGAATTTGTGAAGCGTGTCCAGTAGGCTTGGCTGAAGCAGACTAATTTGGCATCGTACGATGACTAATGTGAAACATCACGATGGACAATGGCATCGTCATCATAGACTGCATTGAATTAATTATTTATGAATAATTCATAACGAATTAATCATTTGTAGCCTACTGTTTCAACTACCTCACCTACACGGTCTATGTTTTACCCATAGCCATATCATAAGTTAATAAAGAAAAGATGCTCACGAATTACCACCCGTTAATCACTTTTTCGGCAGGACTCTGGCATGAATAGGCAGAGTGATCTGTGTTATAATGTTATAAAAGTACAAGCATGAAAGCGAAAGATTGAAGCAGTATACTGACGCTGTGACACGTTACCTGATAGATTCAAAAGACCGAAGAGTCATTAGATAGAGACAAAATGAATTAAAAAATCACAAGTAATAATTACAGTGAGATGAGATTCAGTGGTACATACTTAAACTGCAACGTGATCTGCACTTTGGGGGTTTGTGCTCAAAGCACCTGCTGACTGCCTGAAGATCAGATGAGCGCAAGATTCTGTCTGTCTGTGTATGTGTGGTCACGTGATGTGTGCTTTCAGTGGTCCAGTGTGGACGAATGGCAAAAATGCTAGGTGACACCATTGTGGACGTGCATCATTTTTGTTTTAAAACGCCACATTAAAACTTAGACGTATTAGGCTACGTTCACACTGCAAGGCTTAGTGCTCAAATCTGTTGTTTTCTCAGATCTGATTTTTTGCATGGCTGTTCACACTGCTCCTTTAAATGTGGCCAATATCAGATTTGCAGTGTGAACAGATCATGGTCCTGAACTGACCCGCATGCGCAAAAGTGCATTACGGAGAGCACAAAATGTCTAATTATCCACACACGTGAGTGCTGCATGAGTAAGCATGTTGTCAGATCATGCTTATATGATTATTACCCTTTTCACAGACAACCGGGGTCTATTTCATGAACTGTAAATGATTGTTTTGCTACTACTAATGTTTATTTCAGCATTTGAGATCTAAAATAAGTCTCCTGTGATTAAAAAAAAAACACTAACCTTTTGTGATTTATGACAACAGCGGTGCGTGGCGCTCTGACCACCGGCAGTGTAGTGAACTCATCAAGGGTTAATAAGCAGCCGCAGACTGAGCTGTGAAGGCGGAGTTGGTTTATCTCCGTTTGTGGAGTTATTTAATTTCACTTGGTTATAAACAGCAGACACGTGCAGAAGGGAGGTTTGGGTGCTCGAGCAACTGCCCTTTTTTTCTCTCGGAGAGAAAGTTCTTCCTCATTTGCACACAGATTCCCCCATCCGCAACACCCACGACGCTTTTCGGCTTCGCGATCTACCCGTGCTTCAATCGTTAACCAGATTAGTTCATAAGCACCAGTTATGCCTTCAGATTCTTTTTCAACATGAACAACCAACTTTCTGTGGTACTGTAATTGCCTTCTGTGCCATTCTACTGTGCTGCTAAGGGGTAGAGGATGTTTGCAGCACAGAATGATGACGCATGTCACTCAAAGATTGCGTAAAAGTCACATGAAATCCGACATAACCGTTCACACTGCGGTCGCATTGCAAAACATCAGATCTGTGTCTGATTTAAGACCACACATGAAAGTGGCATAGATCTGACCTTAAAAGATCAGATTCCATACGGTTTGGGCTGTTCACGTGAGGGGGAATAAATCAGATTCGTGCCACGATTGCCTGCAGTGTAAACAGAGCCTAAGTGTGTATTTTTGATGAGCGAGTTTGCGGGTGGGGCGGATGATCGTGATGCCGGCTCAGCATCGTTATTGTCTATTAGCCCAACCCTAGTGTCCAGTTTAACACTGCATCAGAAATCGCTTTTTAATAAAGTTGTTCTATATCTATGATTTTCACATAAACTTACTCGTGACGATGGATCTTCTGACCTTCAGAAATACTTAGCAGATTGTACTCTTGATCAAGCATACTGGGTTAGCTTCCCAATTAGCCTCCTGTGCATTGCTGGATCAAATAAGCAGTCTTTGTCCACTCAGTCACTGCTGTTCATTCATTCAAGCTTTAGAAAAGAGAGTGCTCAAGAATGTGTGTTGCTGCTTTTCACATTGTTGTTAAAACTTTATTGATTTTAAATCAGAACTTTCACTTTCATTTCCTAGCCTAAGGGAAAGATTAATGTGTTAGCAGTGTTGGTAATTCATTTTTTCGCCTTCTTTTAG
Seq C2 exon
TTGCCGCCAGACATGGGCTCCAAAGTTTGGGTAAAGTTGCGGTCAGTCGACGCATGCCCCCTCCAGCTAACCTGCCCAGCCTAAAAGCTGAGAACAAAGGCAATGATCCCAATGTTAGCATAGTACCCAAGGATGGCAGTGGATGGGCTTCCAGACAAGATCAACCAGGAGACGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057583:ENSDART00000135212:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(22.8=97.4)
A:
NA
C2:
PF070016=BAT2_N=FE(35.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]