DreINT0122754 @ danRer10
Intron Retention
Gene
ENSDARG00000098206 | ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050306-33]
Coordinates
chr5:64397859-64398294:+
Coord C1 exon
chr5:64397859-64397946
Coord A exon
chr5:64397947-64398036
Coord C2 exon
chr5:64398037-64398294
Length
90 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGG
5' ss Score
6.17
3' ss Seq
CTGTTATTTGTAATACTAAGGTC
3' ss Score
5.31
Exon sequences
Seq C1 exon
AGAGTACAAATCTGGCACTCCCGCAAAACCACATGGAAGGGAGAATGTGTGGGTCCATTTGACTGATATTAGTGAATGAATCGCAAAT
Seq A exon
GTAAGGTCTTTAAATTGGACTTAAGACAATACCGATTACTCTTTTTATATAAGTTGTTTTTGACGTGTCTCTGTTATTTGTAATACTAAG
Seq C2 exon
GTCCATTCGACATGTGTCTGATGAAAGTCTCTTCGAAACTGTGTAACACACCGGTGTCTTCAACTTTAACCTTCATGATTCATAATGAGTAACACGATAGTGAAAAGCAAAGCCTGGGCTTTTGTGACACAAGTTTTTAATCTGCCTATGGCTCTTCTTCGGCGGATGATAACAAACCTGCTTAATCGAGTGATGATGATGAGCTCGCTCCCGCCACCCAAGATGGACAGTCAAGTTGATTGTAAGAAAAGGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098206:ENSDART00000169209:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.052
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0119514=Pept_tRNA_hydro=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGAGAATGTGTGGGTCCA
R:
GCCCAGGCTTTGCTTTTCACT
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]