DreINT0124783 @ danRer10
Intron Retention
Gene
ENSDARG00000029372 | rasa4
Description
RAS p21 protein activator 4 [Source:ZFIN;Acc:ZDB-GENE-060526-349]
Coordinates
chr5:58624728-58628241:+
Coord C1 exon
chr5:58624728-58624784
Coord A exon
chr5:58624785-58628127
Coord C2 exon
chr5:58628128-58628241
Length
3343 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
GTTTTGTTTTTGTCTTTTAGGAC
3' ss Score
12.36
Exon sequences
Seq C1 exon
AACTGGAAGCAGTGATCCATACTGCATCGTGAAGATTGATAATGAAGCAATAATTCG
Seq A exon
GTAGGTATGCTTCTTATTTTTATTTTCTGACATTTCAATTTGAGACGCAGTGTTTGGTGATCTAATATTGGCTCTGGGCTTCAATACAGCCTGTAATAAGTCTATTTTCCTAACCCAAACAGGTTAGAAATGAAATTTTCAGTGAAGCAGAACTAATTTAATTTGTGCCACATAATTGAAATCCCTCCTGTGCCATAGACCGCTGTGTGGCTGTACTGCTTGTGTACCTACTCACTTGGCAGCTGTATAAAAGGTCATACTAAACAAACCTCTCGTTTGATTTGAGCAGTTTGATGGTGGAGGTTCAAAACACAAACACACACACACACACACACACACACACACACACACGAAATATATATATGTGCTGTGACCGGCAGTACAGTGTGGGCATATTGATTCCTGCTGCTCCACATGGAGTTTAGAGTAGGAGGTGGAGAAATGAAAAAACATATTATATGCATGAAAACACTGCCACTGCCACCCCAGCAAACACAAATATGCTCCAAGAACATTTTGTTAATGTTTCAGTTAGCTTATGGAAACTATTATTGAATGTTCTCTGCACGTTCGGAATCTCTATTTGAGAAAAATGTTTAAAACTTTATTGTGCTTATGGTCATGTTTGAATTGAAGGAAGTTATTTACAGAAACACACACAGTCAAAAAAAACAACACAGTCAATAATCAACTTAACCATAGTTTTTGTTTTTGGATGTGAAAAAAAAAAATCTAGGCTACGTAGTGGTGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAAGTCGCTGGTTAGAGCCTTGGCTCAGTTGGAGTTTCTGTGGGGAGTTTGCATGTTCTCCCTGCGTTTGCGTGGGTTTTCTTCGGGTGCTCCGGTTTCCCCCACAATCCAAAGACATGCGGTACAGATGCATTGAGTAATCTAAATTGTCCATAGTTTATGAGTGTGTGTGTGAATGAGTGTGTGTGGATGTTTCCCAGTGATGGGTTGCGGCTGGAAGTAAAAACGTGCTGGATTAGTTGGCGGTTCATTCCGCTGTGGTGACCCCGGATTAATAAAGGGACTAAGCCAACAAGAAAATGAATGAATGAATGAAAAAAAATATAATCAGATCTGTATGACACAAATATATGAACAGAATATCATACAGTTTTAATTGTTTCGTGTATTCTGGTATACTGTATATTCATTGATATTGCACCAGTGCTTTTAGTATTGAATACTGTGTGTCTGTTTCTGTTTTTTGTGCAGGTGCATTGAGGGCACAAAAACTAACAGGGATCTCATGCATTTTAACCTGTTCTCACGCTCTTACACCACATTTTGTGTTTCTCACAGTGAAATGTAGTAACCCCCCTGCTCTACATCTTTAATACACACTTGTACGAACACTGCATGAACAAAGCACGACAAACTACTCTTTAAAGGAAGAGTCGCAAGAGTGTGAATTCAGCAGAAAATCAGAGCCAAAATTGCACAGTGAATGCTAGGCTTAAAAAGAATAGAAACAGTTAAGTTAACTTAATCGATATGTGTTGGGCAACAAGAAGGAATTGTGTGGAACCCAATATTTTTCAAAGTGAAGACCTGTCTGATGATAAAACACATAATAACTGTGTGGCTTATAAATAAAGTCTGTTTAGAAGCTAATATCTGTCTATAAGTTATAATATACACTGAGTACGGAAAGTATTGAGATTAGAATTAAATTTTGCACTCTTTGTTAAATTGCAACCATTTGCTAAAATCATTTAAGATTTTTTTTCCTTATTAATGTTCACACAGCAATCATTATTGACAGAAAAACACAGAATTGTTGACATTTTTGCAGATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATGAAATATCACATGGTCTTAAGAATTCTGACCCTTTGCTCAGTATTTAGTAGAAGCACCTTTTTTTTTAAGGACAAAATTATTCGCCCCTTTAAGTACATTTTTTCCCCCGACTGTCCTCAGAAAAAACTATCGTTATACAATAACTTGTCTAATTACCCTAACCTGCCTAGTGACCTAATTAACCTAGTTAAGCATTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAATATCCAGTAAAATATTATTGTAACCAGGACTGGGGTGGAGTGACAGGAGACCACAGGAGGTAAGATCCACTATGCAGTTTATTCAACAGTCAGGCAAGCAATGGTCATCAGGTGCAAACAGGTATATGAAGGCAGTCCAGAATCGTAAACGTTTAAACAGGCAAATGGTCAAAAGGCAGGCAGCTAAACAGGAAGACAAGGTACTAGGCTAGGATCGATACACGGAGAAACAAGACAGGGAAACGCGTTGTAATGTATACAGGGAAACAAGACTCGGCAAACTGGTGGCGTGAGAGAGTGGCTTATGAATGGGATGTAATCAGTCTGTGAACAAGGTCCAGCTGGTGAAGCAATCAGGAAACATGAGTGAGCAGGTGTGCGTGTTTGGGAGCAGTGCATGTGTGAAAATGTAGTCCTGGGAAATGCGGAAATGTAGTTTCAAGTTCGTGTGAGAACCAGCGATCCTCTGGGAAGCGATCGCTGGTTGTGACAATTATGTACTGTCATCATGACAAAGATAAAATAAATCAGTTATTAGAGATGACTTATTAAAATTGTTATGTTTAGAAATGTGGTGAAGAAATCTTCTCTCCATTAAACAGAAGTTTTGGAAATTTTAGGGGGCTAATAATTCTGACTTCAACTGTATATATACACATATATGATGTTTATTGTGATAATCATTAATATCTAAATTCCCCCAGCCCTGGCTTTTAGCATGGCGGGTAGGGTAGGTTAGCTGGGACTAAAAGCAATGCGAACACTGAAAGTTTAAACTGAACTTAGGGTCTTATGTGTTGTTTACTTCATCATTGCTTTTCTGACACTAGCGCCTATAAAAAGAACATATTTTTCAGCCAACAGAAAGGTTTAACAGTCACACTATTGATATCTACGGTGGATTCTACGTGAGTGTACTCTAAGCCACAATGATTTTTTTAGGTCAATAAGTTACCTTTTTCCCCACTGGAACGCTAAATCTGATGGTAAATAAATGTTAAGTATGGATCCTAGTTTGACGTTTATTTCCTCAGGCTTTGCTTTATGCTAATCATTAACATGGAGTAAGCCTCATGAGTCTGATGAGTGAAAATGTGATGTGCTGTGTTTACAAAACATATCTGAAGATTACCATATTGTTAATCATTTAATGGAACACTGGAAAAACTTCCAAATATTCATATATCATAATAGGTTTTGTTTTTGTCTTTTAG
Seq C2 exon
GACAGCAACAATATGGAAGACACTTTCTCCGTTTTGGGGTGAAGAATACACTGTCCATCTTCCTCCCTACTTCCGCACAGTCTCTTTTTATGTGCTGGATGAAGACTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029372:ENSDART00000097374:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(23.2=100)
A:
NA
C2:
PF0016825=C2=FE(46.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]