DreINT0126440 @ danRer10
Intron Retention
Gene
ENSDARG00000071213 | rgl3a
Description
ral guanine nucleotide dissociation stimulator-like 3a [Source:ZFIN;Acc:ZDB-GENE-101130-1]
Coordinates
chr6:8008252-8008935:-
Coord C1 exon
chr6:8008865-8008935
Coord A exon
chr6:8008319-8008864
Coord C2 exon
chr6:8008252-8008318
Length
546 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
TCTTCTGGCTAATTCTGCAGATT
3' ss Score
7.91
Exon sequences
Seq C1 exon
AAGATGGCGGCGCGGCTTGTAAAACGGAAAACGGAGGCCTGTTTCTTTGTTTACATCGGTGAGACCTTCAG
Seq A exon
GTAACGTACAAATGAATCGTGTTTATTATGATGCAGGGTTTCTATATTAATTTTTGATTATTAAAGTATTTAGAAGGTTATTAAATGTATAACTGAGTGTTAAAAAGTTTTAATTGAATCCAAACATCATAAATATTGTGTTGTGATACCACCCATCTACTTCTTTCAATACTTGTCGTGATCGTTGAAATTGGTTTCACATTCTGCACTTTCGACAGTTAAATTACTTAATATTTTCTACAGAACTGTACTATTACTGCTAATTAATACGCACAACAAAAGCCTGTCAGTAAAATGAGAGATTGTGTGAAAGGAAAGGAGGCAGTAGGCGGAATAAACCGAATTGACAGCCCCATTAGCCTGTGCAGACAATCAGATTATTGTGTTATTAGTCAGCTTGGAGAGAGCCAGAGATGGAAGGATGAGAAACACAGGGTTACTTCAGTTTAGATGAGCTCCTCGCTTTATAGACACGAAAGAGACTGACAGATCATAAGGGGTCTTTCTGGACGGTCATGGTGTCTTCTCTTCTGGCTAATTCTGCAG
Seq C2 exon
ATTACAAACATTTTTTAAAGGAGCTGATCTACAACCAACAGATTCTGGATAAGCAGCAGGTTACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071213:ENSDART00000151358:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]