DreINT0129990 @ danRer10
Intron Retention
Gene
ENSDARG00000005593 | rxrga
Description
retinoid x receptor, gamma a [Source:ZFIN;Acc:ZDB-GENE-980526-36]
Coordinates
chr2:21111265-21112484:+
Coord C1 exon
chr2:21111265-21111397
Coord A exon
chr2:21111398-21112447
Coord C2 exon
chr2:21112448-21112484
Length
1050 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
ACTGTCATTTGTGTTTGCAGGGT
3' ss Score
10.01
Exon sequences
Seq C1 exon
GTTGGAACGAGCTGCTTATTGCTTCATTCTCACATCGCTCAGTGACAGTTAAAGATGGGATTCTCTTGGCCACCGGCCTGCATGTTCATCGCAGCAGTGCTCACAGTGCCGGTGTGGGCTCTATATTTGACAG
Seq A exon
GTCAGGTCACAACACGGAAACCATCAAACCTTCACTATTAAGTGCAGGACACACCAAACTGATGTCAAAGAACTAGCAGTGACCAAAACTGACTCTGTTGTCGCCTTATGTTTGCTTCGTCTAGTCCTGTCTATGTTTGGTGAACACACCAAACTACTCATGTGTTGATCACAAATGAGCCAACTCTAAAAGCAGATGCTTAGGTTGAGGAGAACTTTATTTGGTTTGAACATCATGGAGTTAATCACATGGGAGGACAAACTAGGATCATACCATTATGTGCAGAAAAACAAGGAGGGGGGGCGAATTTTTCTTTTCTTTTGTAATGAAATAAAGATTTTTTTAATATAAAAACACAAAAAATGGCTTTTCCAAACATAAACCAAGTAAATGGCTAAATTGGGCTAAAACAGAAAGCTCCATGTGACACTAAATGGAGAGCCGTTTGGGAGCCTTACGAGCCAGTTCTCAACTTGTACCCAATGAAAGGTGATGTGTGGGTGGAACCCACAAAACTGCCCAGCAGTGGCTTGGTGTTTTTTCGGCACTCATACAGATTTTTTTTCTGTTTGTCTGCAAAAAAAAAAAAACTCTAATGATGCTAAGCTTAAAAGTATATATACAGTTATACTTTTGGATATACATCGATATTAATATGTAAATATATAAATGCTTATTATGCAGACGCTTCATATCTGAAGGTAGTAATTTGTATTGCACATACAATTTTTTTCAATAATTGATCCCTCTGCATTAGAATAAGTCATTTCATATGAGACCGTACACCAGAGATGTCCAAACTCAGTCCTGGAGGGCCGGTATCCTGCAGATTTTAGCTCCAACTTGCCTCAACACACCTGCAAGGATGTTTCTAGAAAGCCTAGTTAAAGCTTGAATAGCTAGCCCAGGTGTGTCTGATTGTGGTTGGAACCAAACTTTGCAGGACACTGACCAAACGCCTGCTGTACACGATAAGCATTCTAGCGTAAGTCATTTATTTTGTTATCGAATCTGACGTGTTAATCTAAAAACTGTCATTTGTGTTTGCAG
Seq C2 exon
GGTATTAACAGAGCTGGTATCTAAGATGAGGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005593:ENSDART00000021168:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]