DreINT0132421 @ danRer10
Intron Retention
Gene
ENSDARG00000009123 | sele
Description
selectin E [Source:ZFIN;Acc:ZDB-GENE-041014-221]
Coordinates
chr20:34073563-34074058:-
Coord C1 exon
chr20:34073991-34074058
Coord A exon
chr20:34073615-34073990
Coord C2 exon
chr20:34073563-34073614
Length
376 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ATAATTATTTTATTTTGCAGGAC
3' ss Score
9.83
Exon sequences
Seq C1 exon
AAAAGTACAGAACTACAAACTACAGAAAGGACCATAAACAGGACCACTGCAGAACATCACTGATAATG
Seq A exon
GTAAGTAAAGCATTAACAATATGCATTTAAATTATTTTAAGATGCCACAAGGGGAAATTCTGTCATCATTTACTCACCCTTTACCCGTTTCAAACTATTTTCAGTTTGTTCTGTTGAACACAAAATGAGATATTTTGAAAAATGTTGGAAACCTGTAACCATTGACTTCCCTTTGTTTTTCCTACAATGGTTGTCAGTGGTTACAGGCATCCAACTTTCTTCAATATGTCATATTTTGTGTTCAACAGAGGAAAGAAAATCAAACAGGTTTGAGTAAATAATAACAGATTTTTTTTCAGATCAGTTTTTGGTGAAATATCCATTTAAGTATCAATTATTAAGATCATCTAAGTGATATAATTATTTTATTTTGCAG
Seq C2 exon
GACATTTGCAACAAGTTGCAGTTCTTTGCTTCGTTTGTTCTTATCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009123:ENSDART00000136834:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]