DreINT0132843 @ danRer10
Intron Retention
Gene
ENSDARG00000061976 | sema6bb
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb [Source:ZFIN;Acc:ZDB-GENE-081105-129]
Coordinates
chr8:18934698-18937874:-
Coord C1 exon
chr8:18937797-18937874
Coord A exon
chr8:18934757-18937796
Coord C2 exon
chr8:18934698-18934756
Length
3040 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCGT
5' ss Score
6.47
3' ss Seq
TGTTTTTTTCCTCTCCACAGGCT
3' ss Score
12.86
Exon sequences
Seq C1 exon
GAACTGCATCGCCTCACGAGACCCCTACTGCGGCTGGACCACAGGAGACATCTGCTCGTTCCTCCGCGCGGGCACCAG
Seq A exon
GTCCGTTTTAATATAAGCATACATCCACCTTCTTGTTTTAAACATGCGAGTATAATTCAAAGAGACTGATATTATGCAAATAACATTCAAATTTGAGACACACAAGCATTTTAAAGCATTTTTACAACATGCTGCTGTTTTCAGTTTCCCTTTAAGGTTTAAAGTTCACTGTTTACGTTTTAATTGTTTTCTCTGCTTTTAATACTCTCTTTCTCTGATATAAATTTTTTTTCTGTTCATTTTTCTACTGTTTAATGTAAAGACCACAAAATATTTCAAGCTAAATCTAACAATGAACTGGCAATGGGACATCATTTCAAACCAAGAGATCAGACCAAAAAAAAGTTCACATAATGTTTGATTCAGCATTTTGAAGCTTTCTAAAAAACTTTTTTGCTGCCTTAAATTTTTTTTAAGTCGAACGAAATCAACTTGTTCATTAATCTATTAAACTCACTTAAAACATCAAGTTAAAATTTGTGAAGCTTATAAAAAATAGCATTTTGTCATTTCTATATATATATAAATAAATGTGACGTGACTTTACCAGAGTGCCAAATTTAAACTTGTTTTAGGGTGCTTTCACACTTGGTTCGAATGCCTGGTCTGAACCCAAGTTCGATAGTCCGCCCTCGGCTGGTTTGTGTTCACATTGTCTTTTTTCCTTTTGATTCCTGGTACGCTTGCGTCATCAAGCTGCTGTTTTGTGTAGAGCTGTTGCTAGGTGACGGCCACGAAAGCAAAGCACCAAAATGGAGACGTACGCTTATCACAGTTGTTCTGCTTTTACAAAAACTTTTGGTTTTGTTATCAAAACCAAAATACAAAAGCGACTTGCATCTATCTGCCTCAAAAAATGTTAAAAACGTTCAGAACATCACACGATGTCTGCAGAAGTCGTTTTTGGTGGAGACAAGCAGACATTATCACTGAGTCAGTTCTGCTTGTCACCGAGGTAGATGATACACAGACATACACACAAATGAACATTATGAAAAAGTTTGTTGTACAGTTTGCGGTTCACTTCCGTTATTTGGTATGATTGTATTAATATCAGTAGTGAACTGTCGTCGGCGCAATAGCCTAGTGGTTAGCGTGGCAACCTATGTTGCAGTAGCACGTCAGGACGTCCTGAGTTCGAATCCCAGCTTGAGGATATTTCCCAATCATGTCTCATTACTGTCCTATCTAATCAAGGCAAAAAGGCCGAAAATAAAAAAAGAGTACCAGAGTTCGCGTGAACTGTACCCCAGACCACTTCTTTCAGGCTGACTTAGGCAGGCACGTGCACACATAGGGCTCAACCTGTGCAGTGCACATGCCCTTTTTAGTCTTGGATAGAAAGTGCCCTTCCAAAATGATCAAAAGTTCCTCCGCAACACGACACACCCTCCGTCCCGCCCTTCAGTAGGCGCGCGACAACACCGCTCTTGAGTACGCGCGCTTAACCCCCTCCCCCGCTTTACAGTATGCGCGCGACAACACAGCTGATCATAACGCGCGTGACAACACCGCCCTTCAGTACGCGCGCGACAACAACACCACCCCACCCCACCTTTGGACGGTCTCTGCACGGGCCTGGACTTAGGTATAGTTCATGGGTGCGCACCCGAGTTCAGAAGACAAACGTTCACTCTAGCTAAACATACTGTACTTTGATGCCACACAAACCTGGGTGTGAACCAAAAGTCCTAGTGTGAAAGCACCCTTAGAGTGAGGGGAATTTAAATACAATGCATAGTGTTTTGTTTATTACATTTTGTTTATTTAGGACTGCCGGCAGCCTATTTTGCATAAATTCCAAAAGTATTTAAAAAGTGCAACTTGCACACCAACACAACATAATGTGCCTTTGTGATTTTTTAAAATTTTATTCCCCCCATCAACAATAACATTTTGATACTGTGACTTATTTTCCAGAAAACACAATACTTTTTGTTTTCTGCCTCCCTTTAAACACACTTGTGAAAGTGTATCTGTCCTCAGAGAGCTGCTTTTATTGAGTTTTGTGTGCAAATACAGGTTGTCTGCTCGTATTCTGAGATCAAAACTTGGAGACCGTTTTACCTCAGCGCCGTGATGCAATTACAGCTCTCTGGCTGAATCTGATTTGATTTACCAAGGACGGCCAAACCTGTGGATCGATCCGTCTCGCATAATGCTTAGAAATTCGCACCAATCGAATTTCACGGAGGAAAAACAATACAGAAATAGTCCTAATTACTGCCACTCGCTAATATACACAAACAGCCAATATGCAAAAACAAGTTCAGGGACTTTCTTCCGGCTATTTATCAGTCTTTATTCGCTACCGCTCATCCTCAGGAGAGCAGGGAGAAGAAATCTGCATGCTCATTTAAATTCTCAGGGTGGTTCACCGCTGTTGTAAAAAAAAACGGAGCTGTCTTCTCTCAGAGGAGTTCTGAAGATTACAGCTCTGCGCCTGCAGTTTGTTGAAACATTATATTTTATAGACATTTCACAGAAAGCGTTTAACCATGCCAGCGTAAGCATATCTTCTGAAAAACTAAGACCCTGGCAGTAAAAGACCCCTGGCTGCCTTGTTGTCCTGAGCTTTAACTAATTGCCGATGGTAGTGGAAAGCGGCTGGTCCCCCCGGTGCACGCTTCTGCTGTGCGTAGCCCTCGGCCCTTCCTCTGTTTGACTTATGCGGTTGGAAAGAAGCCATTGGTGAGCCGACTGCAGTCATTTTTCTTCATTAATGTGGCTTTAAGGTAACACAGAGCATCTCTAATAGAGCGCTGTGATGCCTCTGTGTGCTTGAGCGCAGATTGAGTTTCTGCACACATCCTGTACAAGCTTTTAATTTCCACTGTTATTATTATTATTAAAGCCAAAAGGAGCAAGGGACCGCAAAATCAAGAAGTTTTTGAATTACCCTTCAAGACAGCAATAAAAAATGTTATTCTTGTTTGAAAAAATACATAGGCATTACTGTAATTCAGCTGGTGCGGTTTTATAGCCTGTTTATGTGGTTTGTTGATGAATGTCTCTACTACTGTTTTTTTCCTCTCCACAG
Seq C2 exon
GCTTCCCTTCGAGCAAGACGTTGAGCAAGGAAACACTTCTCACTTGGGCGACTGCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061976:ENSDART00000089024:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.298
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(40.0=100)
A:
NA
C2:
PF0143720=PSI=PD(33.3=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]