DreINT0132849 @ danRer10
Intron Retention
Gene
ENSDARG00000061976 | sema6bb
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb [Source:ZFIN;Acc:ZDB-GENE-081105-129]
Coordinates
chr8:18978397-18980677:-
Coord C1 exon
chr8:18980587-18980677
Coord A exon
chr8:18978517-18980586
Coord C2 exon
chr8:18978397-18978516
Length
2070 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTTTTTGTGCTTTTTTGCAGAGA
3' ss Score
10.05
Exon sequences
Seq C1 exon
GGAGACACTCTTGAGATGGTGGGTGAAACTGTAAGTGGCATGGCTCGATGCCCATACGACCCGAAACATGCCAACGTGGCCCTGTTTGCAG
Seq A exon
GTGAGAGTCCTCATTTTACTTGCTTTCCGCATTATCAGAAGAAATATGTCTGTTGTCCGCCTCTGCACATTACAGGACTAAATATAGATATAGGTAATGCTGATGTCCTTGTTGTTATTCTTTAACTTAATTACACGCTGGTCTACGAGCAATATTTATGTGCATCTCTCAGTCTAATCATGCACATATGCTCTCCAGCACATTCCCTGCTCGGTTTTATGACTCTACTGCTTCCTGCCTGGACGAACCTAAGGGAAATGAAACATTTTTTGTAATATAGGAAGACGCATTAGACTGGGGAAAGTATATTGAGACCATATTTTATGCAAGGCAGTTATTAATCAGAACAGACAAGGAAGCGAAACAACTGAAAATAACCGTCTTTTAATCAGTTTTGCAACTCATTTGCATAACTCAGGGGCATGACACATGTTTCTACTATGATAGAAGTTATATTTATTTTCAGTGGCCACTTTATTAGATACATTAACTATTACCAGGTTGTACTCCCTTTTGCCTTCAGAATTGAATCCTTTGTCTCAAATCTTTGTTTCGTTTATTCAAGAAGGTGCTGTAAACATTTCTCAGAGACTTTGGTGCATATTGATATAAAAACATCACACTGCATATTAGACCCTGGAAAAGAAAGCTATTCTTAAGCGTACATTTTGTCAGCAATACTTTATATGAAAGCTGAATGAATTAGCCTTTCGTTATGATAGAAAAGGTTGGAATATCTGCACAAGACAACTATTAATAATATAGTATAATAAAATCTAAATGCAATGCACATTAGTATTAAATGAAATCTGTTTTAATATATTTACAGTAGGAAATTTACTAAATATCTTCATGGAAGACATTACTTAACATTCTATTCAATTTTGGCATAAAAGAAAAATCTATGCTTTTGACCCATTCAATGTATTTTTGGCTGTTTTTAAAATATACCCATGCAATGTAAGAACTTTGTGGTCCAGAGCCGCTTATTACAACATGATGTGAATCTCCTATTTGTGTGATTTGTAGTGTTTATAATAGTGTCGTAGTAGAATTTTGTTGTTCTGAATTGAGTTTGCTGTAGCTATCTGACATAACTCTTCTTCTGCTGCTGTAGCTCATCTGTTTCAAGGTTGGATGTGCTCAGAGATGCTTTTCTGCAGAGCTTGGTTATAATGAGTGCTTGTAATAAATGAATGCTGTCTTTTAGTCAGTCCAAAGCAGTCTGGCATTTTTTCATTGACCGCTGGCTTTTTTGGGCCATTCTATATAAACCCTACAGATCTTTGTGCATGAAAATCCCTGCAGATCATTCGTTTCTGAAATGCTCATACCAGCCAGAACACATCAAGTTCAGTCACTCAAATCCCCTTTTTTTCCCTAATGATGGGTTTGAACTTCAGCAAATCTTCTTGTCTAAGTCTATATATAGTACATGCTACATTGACTAATGTGTGATTTGTTGAAATGAGTTATGTAGTTGAGAAGCTTTTATAGATTCCAATAGACTTTAACAGTTGACAACAAAATTAATAACCATTATTAAATATTTGTCAAGTAACTTAGAGATTTCGTTTCAACACATTTTTAAACATAATTTGTTTTGTCTTTGCCATGGTTACAGTTCTTACTATTTTGCTAGTTATTTTGCAAGATACTAGTATTCAGTGCAATTTAAAGGCTTTACCAGGTAAATTAGTTTAGCATGGCAAGTTAGGATAATTATACTAGTTACTGGACAGCAAACGTTTGTTTTTCGCCAATAAAAAAAAAAAAAACTTTCTAAAGGGGGTCAACAATATTAACCTAGGAAGTTTAAAAAGTAAAATCATTGTTTCATTTAAGCCAAACTAAAATAAAAACATTATAAAACATAATATGAAATACTGTGGGGGAAAAAATTTGTTCTAATAAACAACACAAATATTTTATAAAGAATTAAAATGTCAAAGGAGGGCTAATAATTTTGTCTGAAAACTAAAACTATAGGTTTATTATCCTTCTGTGCTTTGTATGTTTTTGAACTATATAGATATTAAATAGAGAGTTTGTTTTTGTGCTTTTTTGCAG
Seq C2 exon
AGAGGAATCTCTACACGGCCACAGTAACTGATTTTCTGGCTATCGATGCTGTAATCTACAGGAGTCTGGGGGACAATCCTGCCCTGCGAACGGTGAAACACGACTCCAAATGGTTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061976:ENSDART00000089024:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.1=100)
A:
NA
C2:
PF0140314=Sema=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]