DreINT0136336 @ danRer10
Intron Retention
Gene
ENSDARG00000054313 | si:ch211-14a17.6
Description
si:ch211-14a17.6 [Source:ZFIN;Acc:ZDB-GENE-030616-589]
Coordinates
chr2:38303672-38303955:-
Coord C1 exon
chr2:38303864-38303955
Coord A exon
chr2:38303775-38303863
Coord C2 exon
chr2:38303672-38303774
Length
89 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
3' ss Seq
TCAGTGTGTTTGGATTGCAGCAC
3' ss Score
6.21
Exon sequences
Seq C1 exon
GTGGGAGCTTTTAGATGATCCATTTCAGAATTCTCTTTGCCAGTGCTGTGACTCAACCTGCAGTGGTCGTGAAAAGAAGGATGCAGATTTTG
Seq A exon
GTAAATCAAAAGCATATTAGTTCTAAACCAAAGATGCAGTAAACCATTTTAATGTGAGTTTGTTAACATTCAGTGTGTTTGGATTGCAG
Seq C2 exon
CACCTCAAGGACTGGTGTTAAAATCTGTGTTAGGACCTTTGACTTTTACTGAGGAGTCCCAGTAATTTCTGCCCCAACTGTCTGTTTCTTCTCTCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054313:ENSDART00000061677:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAGCTTTTAGATGATCCA
R:
AGAAACAGACAGTTGGGGCAG
Band lengths:
181-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]