DreINT0137917 @ danRer10
Intron Retention
Gene
ENSDARG00000093780 | si:ch211-212c13.6
Description
si:ch211-212c13.6 [Source:ZFIN;Acc:ZDB-GENE-131119-8]
Coordinates
chr15:21036558-21036773:-
Coord C1 exon
chr15:21036729-21036773
Coord A exon
chr15:21036642-21036728
Coord C2 exon
chr15:21036558-21036641
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
CGTTGTGCCTTCACAAACAGGGC
3' ss Score
8.63
Exon sequences
Seq C1 exon
GAATTGAAAAAACTAAAAGCCACAGCTGGCTGCTTTGCCCCAAAG
Seq A exon
GTAATTTCTCTTTGCGTTCATACCATATGCAATGTTATTAAAAGATTTTGATTGGTTCTTGAAGTTACGTTGTGCCTTCACAAACAG
Seq C2 exon
GGCAAAATCACTTGGAGGAGGTAGAGCTGGCTTTTCCACAAAATGTGATAGAGGGTTCAGGAAGAGCCACTGTTTCAGTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093780:ENSDART00000137386:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]