DreINT0137927 @ danRer10
Intron Retention
Gene
ENSDARG00000095315 | si:ch211-212c13.9
Description
si:ch211-212c13.9 [Source:ZFIN;Acc:ZDB-GENE-131118-22]
Coordinates
chr15:21155024-21156601:-
Coord C1 exon
chr15:21156526-21156601
Coord A exon
chr15:21155181-21156525
Coord C2 exon
chr15:21155024-21155180
Length
1345 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
TAAATCCTTCACACCACCAGGTT
3' ss Score
5.31
Exon sequences
Seq C1 exon
GATACCAGAGACAACTGAAATACAGGCATAGAAATGGAGCATACAGCACATTTGGCAATGGAAAGGGGAATGCATG
Seq A exon
GTAAATGCTGTGTTCATAATTTTGCTAAAACACTAGGGATGTAACGGTATTGTAAATACCGTCATACCGCAATATTATTTTTTTCGATATTATCGAAGTCGCATGACTCGGTAAAACTAAAGGTCTTCTAAGAAAATTTGCTCAGGCGAATGAAGCGAACGGGACGTAGCTAAAACTACATTTCCCATCAGCCCAGGCGTGGCCATAATCCTTTGCGGTCTGTTGTCGCTACAGATCCAGTAATGCGGAAATGGAGTGTGCTGCTAGTAGCGGAGATGAAAAAAAGATGGAAATGATCGAACCTAAAGCGGGTGTTGTCGCCGCGCGCGTGCTGAATAGTGGTGCTGTCGCGCGCGTTCTGATCAGCTGTGTTGTGGCGCGCGTATTGTAAAGCGCCGAGGGGGGGTTGAGCGCGCATATTCAAGAGAGGTGTTGTCTCGCGCCTACTGAAGGGCTGGATTGGACGGAGGTTGTGTCCCGTCGCGGGGGCACTTTTGATCGTTTTGGAAGGGCATTTTCTATCCAAGACTAAAAAGGGCATGTGCACTGCACAGGTTGAGCCATATGTGTGCACGTGCCTGCAAGTTGGGGAATACGACTAATAACAGTCATGGGGACTGCAGAAACACAGCACACTGTTCAGATTGATGCAGACATTGACTTGTACCGCAAAGAGATCTCTATCTCACTCATGGTTTGTCTTCTCAAGTGGGGGAAAGACAATGCACAACGTTACCCCACTGCTGTCAACCTGGGCCAAGTCATATCTCTCTTGTCCCAGAAACCTCAGTCCCAAATGAGAGGGTTTTTTTCTGTTGCAGGGGACATTGTAAATACCCAGAGATACCAGCTTTTACCAGATTATAATTATATGATAATTTTCCTTTAAACCCATCTCTATCTAAGTGAGTGAGTGATTACATGTTGAATGTGATGAGTTTTCAACAATACTAAATTGAAACTTTATTTTTTTACATGGTTTAATAATTTTTTGTTATTAAAATTGAAGTTAGTGTTTCAAAGCTTACAGATAGATGGCTAATTTGTATGTCATTGACACTTTTGGCACTTTTTTGGAGTATTTTCAAAAGTTTTTTTTCCTGTAAATGATTCAATAAATACCGTACCGTGACATTCATACCGAGGTATTACCGAACCGTGAAATTCTGATACCGTTACATCCCTATAAAACACACATTAATATGGTACAATTATATAAATTACATTACGTTAATATAAATACAATTATAACCCTAAGTGAGTGGTAAATAAGAAATAGAAAAAAATGCTTGCTTAGCAATTAATGATGGATGACTTTTTAATATTAAATCCTTCACACCACCAG
Seq C2 exon
GTTGACTGCCTTTGTCCTGAAGTCTTTTGTCAAAGCACAGAAATACATATATATAGATCCACAAATTATTAAGAGTGCAAAGAAGTGGTTAATAGGTACACAGGATCCAGAAGGCTGTTTCATCCAGCATGGAAGACTATTCAACAACAGACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095315:ENSDART00000142311:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATACAGGCATAGAAATGGAGCA
R:
TCAGTCTGTTGTTGAATAGTCTTCCA
Band lengths:
216-1561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]