DreINT0137936 @ danRer10
Intron Retention
Gene
ENSDARG00000095315 | si:ch211-212c13.9
Description
si:ch211-212c13.9 [Source:ZFIN;Acc:ZDB-GENE-131118-22]
Coordinates
chr15:21165987-21166245:-
Coord C1 exon
chr15:21166161-21166245
Coord A exon
chr15:21166087-21166160
Coord C2 exon
chr15:21165987-21166086
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTCTTGAACATTTTCAATAGATA
3' ss Score
5.31
Exon sequences
Seq C1 exon
TTTTGCCTAAGTTTGGAGTTTTTGTGATTTCACCAAATCCTGTGAGCATAGATGATGAGTTCATGGTCATTGAGGTTTGCGGAAA
Seq A exon
GTAAGTAGCATTTTAAAAGCAGAAAAATTTTGTTGATTTTAACCATGTCCAATTTTCTTGAACATTTTCAATAG
Seq C2 exon
ATACACTTACGGGAAGCCTGTACTTGGTAAATCATCTGTGAAAGTGTGCCGTAAAACTCTTGACACTCACAGTCCACTGTGTGTAAAAGAAAGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095315:ENSDART00000142311:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTAAGTTTGGAGTTTTTGTGA
R:
TGTGCTTTCTTTTACACACAGTGG
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]