DreINT0137942 @ danRer10
Intron Retention
Gene
ENSDARG00000014623 | si:ch211-212d10.1
Description
si:ch211-212d10.1 [Source:ZFIN;Acc:ZDB-GENE-050208-355]
Coordinates
chr22:18505568-18508690:+
Coord C1 exon
chr22:18505568-18505724
Coord A exon
chr22:18505725-18508569
Coord C2 exon
chr22:18508570-18508690
Length
2845 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ATTTTTTTCCCCACCTTTAGTCA
3' ss Score
7.48
Exon sequences
Seq C1 exon
GTTTCTGCATGCGAGATGGGATTGTTGGTGGGAAAGTGTCCATTCCACACAGTCGACCCTACATGGTCTACATTAAGGACTCAAATTCAAAATTAGCATGTGGCGGTTTTTTGATAAGAGAGGATTTTGTGCTCACAGCAGCCCACTGTAAACGAAG
Seq A exon
GTAGGTGAAACTATATATTAGAACTTTGTCAAAAGTTTACATTCTTAAACATGAGGCTGTTTTTTTTTTCTCGTTTTGAATCAATGTTATAGGTAAACAAGATTTTTGCTAATCAAAAAACTTTGATATTTGACATATTTAGAATAGTTTAAATTTAAATGACACTTTTCCACTTTAAAAACCATTTATAAAATAGGAAGCCTCCATGGATGTAAAAGGTTATTTATAGAACTACGTGCCAATTACATATACGTACTGACTTAATGCACATAGACCACAACTTACGCCCCTACAGCTAGGTAAGGTCTAGATCGGTTATGCGGCCGGCCGGAAGTGTGATATGCACATCAATATAGCAGCATTTATTTTTGACACTGTATAACAATAATTGATATTTGTACAGTACTGTGACGGTTAGGTTTGGGGTGGGGGTAGGTGTAAAAAAATACAATTTATTAGGTAATTTAATAGATAACATAAATAATACTCGGTACAACTACTGTTTTTATAGTGATGTGATGGTTGGGTTTAGGGTTGGGGTGGGAGTAGACGTTAATAAAATTTAATAAATGGGAAATGTCATAAATAATATAAATAATTCTCATTAACTTCCGGCGGCAACCATATCCGATCTAGCAACAACTGCAAAAAGATCAACTGGTGGACACATTGACTGTAAAATATGTGGACGTAGTATCCGTGACGTCACCCATAGGTTTATGAAGAACCCAAAAGAAGAGAAAGGTCATTTAATAATGATAATATACAGCAAGATGTTTCTGTTACTTAAAAAAAATTTTTTTTTTTTGGTTATTATAAATCTGCCTCTACTAATAGAAATGTTTTATTTTCCTGTTTTTTTTGCAAGAATTTACTCATTATTTACATTGAATTTCATTATCTAAAAACAAGAACGCAAACAGAGCTATTTCATTTTATAATGACTTTAATTTATATATAGGATGGGCCATTTATATGGACACCTTAATAAAATGTGAATGGTTGGCGATAGTAACATCCAGTTTGTGGCACATTAGTATATGTGAGGGGGCAATTTTTTCAAGATGGGTGGTGACCATGGTGGCCATTGTTGCCAGCACCTGAATCTACAGATACTGGAAGCCTGTGCATTTCTCCTGCGGTGTTGCTATCAGTGTGGGAGAAGAGGGTTGCATTGACAATCCAACACAATGGGCAGCACATTGAACACATTTTATAAGTGGTCAGAAACTTGTTAATAACTCATTAAGGAATGAAGTTAATTAAAATTCCCAATAAGTTTGATGTGTGGGCCAGACAGAATCTGCGGACATTTTTTGCTATTTCTGCGGAGAATTTTGGTAAAAGTCTGTGGATTTTTGTGGAATTATTCTGGGAGTATCATAACTAAAACTTTAATATATGAAATAAAAGAATATATCTTTTTACTTTTTATTTAATGTTTAAAATGCAAATCCAATAAGATTCACTTTATTTGGTAAATAAAGCAAGTTTGTCATATAATATATCTAGTAAAAGACAAAATTTTACTGTACAAACTGCACTGTACATAAATCAGATGAACATTTCTACATTAGTCAATAATATTACTGAAATTAAGTAAAAAGGATAAATATAGATTTACACACATTTACTCAAGTAAATGAACAGAATTATTGATGGGCTATATCTGCAGAAATCTGCTGAATTCTGCATGTGCAGATTCCGGGTGGGCCTACAAATGACCCTCTTCCTATTGAAAAAAAACAAAAGTTGGATCCAAGATGACCGACTTCAAAATGGCCACCCATCTTGAAGTTTGTCCCCTCACATGTACTAATGTGCCACAAACAGCACATTAATATCACTAACCATTCCCATATAAATGGCCCACCCTATGCTGTAATTGATTCCTAAATGTCTTACCCTCAAGTTTATATCATGTTCTTTATTTTTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCATTCTCTTGTAACTTTTTTCATTAGATTTTTTCATTATCCTAGATCGGATATGGTTGCGGCCAGAAGTTAATGAGAATTATTTATATTATTTATGAAATTTCCCATTTATTGTGTTTTAATAACGTCTACTCCCACCCCAACCCTAAACCCAACCGTCACAGCACTTTAAAAACAGTAATTGTACAGAGTATTATTTATGTTATCTATTAAATTACCCTATAAATTTAATTTATTAACACCTACCCCCACCCCAAACCTAACCGTCACAGTATTGTAAAAATAATAATTATTGTTATACAGTGTCATAAAAAAATGTTGCTATACTGATGTGCATATCGCACTTCCAGCCAGCCACGTATCCGATCTAGACTTGATCCAACAGCTAAAAATGTTTATGGATTATAACATCTAAAGCTATTTTTTGTGAAAGAAATCAGCTTTTTATTGACATTTTACTAGTTTAAACCAATGTATTGTATAAGAAATAAAATACAGCATTACAACATTACAGATCATTTATCACATCAAACTAATACAAATTACAAATGAAGTCACTTTTACAAAATCAAAAGTTTACTGCTAATTTACAGATATTATTTACAGTGTGTAGATAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGATAGGCAGACAGACAGACAGACAGACAGACAGATAGATAGATATTTTCTATAATTTTGTAATTTTTTCTTCTGATATCTATTTTTTTCCCCACCTTTAG
Seq C2 exon
TCATCTAAAGGTCTATTTGGGGGTCAATGACACCCACATTTTACCTCACGGCATCGAGGTAGAAGCCACACCACATCCCAAATTCAATAATGCACCAGGCGATGACATCATGCTTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014623:ENSDART00000105415:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(27.8=84.9)
A:
NA
C2:
PF0008921=Trypsin=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]