DreINT0141580 @ danRer10
Intron Retention
Gene
ENSDARG00000103650 | si:ch73-329n5.1
Description
si:ch73-329n5.1 [Source:ZFIN;Acc:ZDB-GENE-131121-475]
Coordinates
chr12:44452484-44455722:-
Coord C1 exon
chr12:44455681-44455722
Coord A exon
chr12:44452618-44455680
Coord C2 exon
chr12:44452484-44452617
Length
3063 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
TTTTTTTTCTAACGTTGCAGCAC
3' ss Score
9.05
Exon sequences
Seq C1 exon
ATGGTAGGAACATTACTGCCACTCCAGTGTCAAGCTCAGCTG
Seq A exon
GTAATGTAGTTTGTTTTGCTAATATTATGTTTATGATGGGTCAAAAAAGTGTTTATTATGTGAGCAATATCACATGAGTAGCAGTGCGGTATGACTGTATATCAGCACTGATGGGAGGCTTGCTTTGCATTTCACCAATGCTGATATACAGCCCTACCGCACTGCTATGAGTGTGATATTGCGTGTATACAACAGTTTGACGGCACAATCGTGTTTCTAAAAAAGAAAATCTAACACGGAGAGTATAAAAACCCTTTTTTTATTAGGAACAACTTTCTTCCGCCATTCATTCACATCAGCAGCTGAATTCAGAACAGCAGAAGCCATTACTAATTCACCAACGTCACTTTTAAAGCTAGTGTTAGAATGACTCTCTATAGCGTAATGTCTGAAGTGATGACATAACTGCTGATTTTGCTCACAATTTAAGATTATAAGGCTGAATGTGACATGAAATGCCATGCGTCTACAGAGATATCTCCCTACAGTCTATTACAGTCTACAGTAATTCTCTGTTGTCATCGGTACTTTGATAGGTGCCAGGTGTCCCAGTGTTTACGCGTTTCACCAAAATGCTGTCGACTACATCCATGCCAGTCAATGACAATGAGTAGAAAAAAGGAAAAGAAAAAGACACTCAAACATCCGTCGCAAAATAAAATGTAGCATTATTGAAATAAAAGTATGATACAGCAGTAGAGCGACCATCACACACTCCTCCTCAGAGCTCGCCAGAACTGAACTGAGCTCCCATACATGTGTGATTAACTCAAAGGTCAAACAACCACAGAAGAAGTCCTCTTAAAGGGGACATGACATAGCAAAGTAACTGTATTAAAATAAGCCCTGTCCTTATAAATATGCTGCATAGTTGCAATCTATTAAAAAAAGAGAGAGATCGACTTAGAATATCACTAAACAGTTTAATAATGATTTGATCAGTTGTAGTTAGAAAAAAACGCAGTTTTAATCTTCTAAGCAAGGGCTTATTATGCGGTCCTGGCGCCATCTTGTGGATAGACAACATCAACCGTCTTTGAATGTTTTGAAATAGGCACTCTCCTTCTAAATAAACTGCATAGTTGCAATGTAAACAACTACATTCTCGACTAAAATAGCATCAAAAGTACATTATGTTGCTCAACAGCAGGAATATTTATCAAGCTGCACAGCGTCCTCTGCTTGTATGTGGGTGGAGTGATACACAAAGGTGAAGAGGCCTTTGTGTGCTGTTACTGGCAAAATATCTCACAGCTATTAGCCAATCAGATTCAAGAACCAGACAGAACTGTTGTATAAATAGATATTAGCTGCATGGTGGTGCAGTGGGTAGCACGATCGCCTCACAGCAAGAAAGTCCCACGGGTTAGTTGGCATTTCTGTGTGGAGTTTGCATATTCTCCTTGTGTTTGCGTTGGTTTCCCCAACAGTCCAAACACACACATGAGTGAATTGGGTAAGCTAAATTGGCCTTAGTATATGCGCGTGTATGGTATTTCCCAGTGATGGGTTGCAGTCGGAAAGGCATCCACTGCGTAAAAAATATCCTGGATAAGTCAGTGGTTCATTCCACTGTGGAGCCCCCAGATTAATAAAGGGACTAAGCCGAAAAGCCGAATGAATAAATTATTGAATATTTATACTTATTTGTACAATGACTTAACAGTGGTTCTAGACCTTTTTTGTTTCCTTTTTCTTTTTAACATAAAAGAAGATATTTGGAAGAAAGCTGAAAATGTACTTTATAATATCCATACAAGAAAAAAAATTATGTGGCAGCCAATGTGTCACTGGTTTCTAGCTTTTTTCAAAATATATTTTGTGTTTAACAAACAAAAGAAAGAAACTTGACGTAAAGAAACTGTACTTGAACTCGATTACAAGTTGTCAACTGAAAAAGCCAGTTGCCCAACAATTTTAAGTTGTCAACTTTTTTACAGTTTGCATATTCACTCAAAAATATTTTCTGCTTGTTCAACCTACTTAATAAAATGATCTGAAAAAAAAAAAAAAACAATTCTCAAAATTTCGTTGGAACAACTTAATTTTTTATGTTTTATTCACATAAATTTAATAAAAAATGTTACGTTAATTTTTGTTGGGACAACATGAATGAATTGTGTGGAATCCTGCATTTTTTGCAGTGCTGTAAACTTAAAAAAAAAAAAAAAAAAAACATTCATTTATTTATGAATTTAACTTCTGCTTAGTCTCCATTTCAGGTCGTCACAGTGGAATGAACTGCCAAAAATAACAATAAAAAAATAAAAATAAAAAAACAATTTGCTGCAATAATGATGGCGCAGTGGGTAGCACGATCACCTGACAGCAAGAAAGTCACTGGTTCAAGGTCCGGGTCAGTTGGCATTTTTTTGTGGAGTTTGCATGTTCTCCATACTCTCCAGGTGCTCCGGTTTCCCCAACAAGTCTAAACACATGTGCTATAGGTGAATTGGGTAAGCTAAATTGGCCTGTAGTGTACGAATGAATGTGTGTGAAAGCAGGAGTATACGTGTGTTTCCCAGTGTTGGGTTGCAGGTGGAATGGCATTTGCTGCGTAAAACATATGCTGTATTAGTTGGCGGTTTAATCCACTGTGGCGATCCCTGATTAATAAAAGGACAAAGCTGAAATGAAAGTGAATGAAGAATTTGCTTTTGGGTACAGTGTATTTCCTTTGAAACTTTAAACGTCATGATATTAATGATATGTGTGTGTCAGTTTAAACATATGGGTAGTGTATACCTCATAATGCTTTAGTCACTTTAAAAATTTGTGGCAATTTCTGGAAAATGTAAATGGCTGACCCTTGGGATACAGGCACATCTGATGGAACAGAAGTGGAAACCAAAACCTGCTATCCTGTATATCAACATACTTTTAGCTATCTTGTAGTTATTCCATATTTTATTGTCACATCCTCATGAGTCCACCACCAGAGGTCACCACTAATCACAACCAGAATGAAACATGAAGCTCATTAAGCAGTGTGAAATATAAACTTGGTTATACAGAAACAGTAATGGGTATGAGCTTTTTTTTTTTTTTTTTCTAACGTTGCAG
Seq C2 exon
CACCTGGAATCTTCTACTCATTCGGTTTAGCAGCAGGAGACTCAATAAATCCTGCTGTTGATGATGGAGGCTCTTCTGTTATTCCACTGTTGAGTCCATTACAGTACTTTGGCCGCACATACCAGCAGATTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103650:ENSDART00000171730:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]