DreINT0142293 @ danRer10
Intron Retention
Gene
ENSDARG00000103947 | si:dkey-111k8.1
Description
si:dkey-111k8.1 [Source:ZFIN;Acc:ZDB-GENE-131125-19]
Coordinates
chr3:61294135-61296766:+
Coord C1 exon
chr3:61294135-61294301
Coord A exon
chr3:61294302-61294491
Coord C2 exon
chr3:61294492-61296766
Length
190 bp
Sequences
Splice sites
5' ss Seq
TGGGTTGGT
5' ss Score
0.35
3' ss Seq
CAGACTTTATTTTTTTCCAGACC
3' ss Score
7.24
Exon sequences
Seq C1 exon
GCTCCTCCTCTTACAATGAGGCTCCTCCTCCTGCTTCAGGTATAAATACTGCAATATTCCCATCAGCCCACCAGTGAAGATGAGCATCAGACCGTCAGCAAGAAGACAGAACATGAGTGATCCAGAACCCTGCAGATTTACACATAAAGACACTGAACAACAAATGG
Seq A exon
GTTGGTGTTTATTCCTGATTCTTCAATAATAAGCCCGTAGAACAATAATGATAACAGTTAACTGAAGCCCAGTTTAATACATATTTATTAAGACAAGGCCAAACTAAATATGATTAGATGTCCTTAAAATTAAAGTTTGTAAAGGCAGTGTTTTGACTTACTAAAACTTGCAGACTTTATTTTTTTCCAG
Seq C2 exon
ACCCAATTGATGGAGATGAGGAGACTGAAGAGGGTAATTATGTTAAAGCTGGGAAAATACCTAATTTGAAGACATGTGGTGTTTTTACTGTGAAAAACAGAGACAAAAATCGTGTCATTTGGACAAGGCGTGGACAGAGTTTGGGAAACAAAAAGAGGATCCACACCGGAGAGAAACCGTTCACATGTACTCAGTGTGGGAAGAGTATCAAATACTCATCATCCTTTAATGAACACATCAGGATACACACCAGAGAGAAACCACACACGTGTACTCAGTGTGGTAAGAGTTTCAGACAATCATCATGCCTTAACACACACATGAGGATCCACACCAGAGAGAAACCGTTCACATGTACTCAGTGTGGGAAGAGTTTCAGCCAATCATCATGCCTTAATCGACACATGAAGATCCACACTGGAGAGAAACCGTTCACATGTACAAAGTGTGGGAAGAGTTTCAGCCGATCATCACACCTTAATAGACACATGAAGATCCACACTAGAGAGAAACTGTTCACATGTACAAAGTGTGGGAAGAGTTTCAGTCACTCATCACACTTTAATAAACACATGAGGATCCACACCAGGGAGAAACCATTCACTTGCACTCAGTGTGGGAAGAATTTCAGCCGATCATCAAACCTTAATCAACACATGAGGATCCACACTGGAGAGAAACCGTTCACATGTACTCAGTGTGGGAAGAGTTTCAGCCAATTATCACACCTTAATAGACACATGAAGATCCACACTGGAGAGAAACCATTCATGTGTACTCAGTGTGGGAAGAGTTTCAGTCGATCATCATCCCTTAATGAACACATGAGGATCCACACTGGAGAGAAACCGTTCACTTGCACTCAGTGTGGGACGAGTTTCAGCCAATTATCACACCTTAATACACACATGAGGATCCACACTGGAGAGAAACCGTTCACATGCACTCAGTGTGGGACGAGTTTCAGCCAATTATCACACCTTAATACACACATGATGATCCACACTGGAGAAAGACCATTCACATGCACTCAGTGTGGGACGAGTTTCAGAGACTCATCATCTCTTAGTAGACACATGTTGATCCACACCGGAAAGAAAACGCACAAATGTGATCAATGCAGCAAGACATTTTTGATGGCTTCACAGCTGAAGGTTCATCTTTCAGTTCATAGAAGCGAGAAGCCTTATTCATGTCCTGTGTGTGAAAAGAGTTTTACATTGGAGTGGATATTAAAAAGGCATCAGAAGATCCACACTGGTGTGAGAGAGCATCTGTGCTTTAAGTGTGTGAAGACCTTCATGTCAGCTGCACAACTGAAACAGCATGAGAGGATTCACACTGGAGAGAAACCGTACAAGTGTTCACACTGCGACAAGAGATTTAGACTGTCAGGAGCCCTGAAATCACATGAGATGATTCACACTGGAGAGAAACCGTTTAGGTGTTCACACTGTAATAAGAATTTCCGTCAATCTAGAAGCCTGAAAACACATGAGATGATTCACTCTGGAGAGAAATCGTAGATGTGATCGGCGTCTACAGAGTTTCAGACAGTCAGAGCAGCTTAAGAAACACATGAACATCCACACTGGAGAAAAGCTGCACACATGACGTCAATGCAGCAAAGTGGTCTCTTGTGTTAAGAGAGTCTCACTCTGAACATCAGAAAATGCTGCTGTGAGAGATTGAGTGTAGAAAGTCTGTCCTTTTGTCTTGAATATTTGCTTATTTTAGGGCGCAGTGGGTAGCACAGTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAGAAAAGATTTTCGTTATTCTTGTAGCCTATAGGCCTACTCAAGTTTTTTTAATCGGCGTAAGTAATAACTATAAATATGTTTTGCATCAATAAAGCATTTTATATCTGTAAAGGTGTCTGCAACTTTTGCCAAGCATCAAATCACCGGCATATTCACTGTCAAAACATGTGCATGACTGCACCATTTTTTGTTGTGGAATATTGTGCATGGACGCGTATGTATCTAAAAAGGTCAAATCAATAAGTTTTCACTTTGAACCAGCAGGTGGCAGTCTTTTATTTCAGAGTGCAGATTGCATAAGTTGAACAATATATATTTTTAAACTTTATATATAGTTAAAATATATATATTTAATATTTTCCCAAGTGTATATAACAGGGCCTGAGTGGGACTCCTTTTCAGCCCTGGTGTTTCAAGGCTCAGACCGGGCCACCTCAGTTCACGACTGACTATATTACAATAAAATCATTTCCAATTCAGTTTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103947:ENSDART00000157517:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.9),PF0013017=C1_1=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=5.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCCATCAGCCCACCAGT
R:
CAAACTCTGTCCACGCCTTGT
Band lengths:
256-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]