DreINT0142294 @ danRer10
Intron Retention
Gene
ENSDARG00000096851 | si:dkey-111k8.6
Description
si:dkey-111k8.6 [Source:ZFIN;Acc:ZDB-GENE-131125-17]
Coordinates
chr3:61152406-61154685:-
Coord C1 exon
chr3:61154672-61154685
Coord A exon
chr3:61152563-61154671
Coord C2 exon
chr3:61152406-61152562
Length
2109 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TATTTTTTTAATATTGGCAGATC
3' ss Score
6.54
Exon sequences
Seq C1 exon
GTGCATCGCTGAGG
Seq A exon
GTGAGTTGTGAGAAATGCTGCTGGAAGTATTTACTTTTCTTCTGGAAAAGCTAATTGTTTATGTTGTAAGTTTGGATGTTTGTGATGTTTATGAAAGCTTTGTTGCGTGATTTTGTTTTGTTTCGCCGCTAATGTAATTTTTGTAGGAATTTTCAGGTCTCAGAGTTTAGTATTGGTGCTAAAAGCAGGTTAGCAAATCGCCATTTTATACTAATGTAACTTGTATTTTGCAGTACTTGTACTTGGTATCTTCTTTGCTCAAGTAAAAGTAGACTAATTACACTTGCATTGATTGTATTTACATTATATAAGAATTATGTGAATGGATATATAGGTTGTAGATTAGCGTCTGAAATTTGTTGTCTTTATAGTCTGAAGCTCATCAATATAATCGGAGCTGCTGAAATCCTCTTTAGCTCATATCAGTAGTTTCTGTTTTCACCTCATTCATTATGCTGAGGTGTAAATTCCCTCATTGAGCTCATTTTATTGGTGTCAACCGAGAGTGTAGATTTGCTTTTGATATTGGTGGGAAACTAATTTGATATGACATATTTCTTCAGCTATTTTACATGTAAATTTCATGTATGTCATGTTTCCCCACAATGACATGTTTTACCGACTGGGTGTGATTTTGAGTTTGCCAAATATGATGTGATCCTGGATTAAAATCGATGCTGAAACTTGAACATGATTTTTGTTTAAAAATTGAATTTATACCGAATCCCTGCCCATAAACCAAACCCTAACTGTAGTGTTTCCCCTAGGTTTAGTTTGGGGACTTGACTCGGCTGTTTAGACTGACACTGACACAAACAGAGGGTCATGGTGTTGTTTCTTTTAATGACGGCAGTAAACAACTGAACAATTGTTTTAATTGTAAACTAAAAATTAACATTTTTTTTTTATCCGTCAAATGTGCAGCTTTTGTCACTGCAGTGTATCTTTCTGGTTTTCTGTCAAGTACACTAATACTACATTGATATTAGTATACTTACTAAATAAAGTATGCTTTTATACTTGACCTTTACTTAAGTATACTTCTTTTTCCTAAGGGTGTATTTACTGACTTACCAAGACCAGTCTTGTTCAGCCAGGGGGAGTATTGCTGCTCGACAGCCAGGTTGGGTCAAAGCTAGGGATGCTCCGATCAGGATTTTTGCTGCTGATACTGAGTACTGATTCCTTGTCATGGTGATCTGTTGATATTGAGCACCGATTCTACTGCTTTATAATGCATTAAGCACATTTTCCCTCTAAATATAAATCTTAAGAGAACTTGCCTTACCTAAGGGAATAAATAAAGGATGCTGCATTTAATACTAGAAACACATCTCTTATAACCATTTAGGTGTGAACATTATTTTAGTATAACATAATTTTGCAGATCTCTAAATTTGCACTCACGATATCTTCACTGCTCTATTCATTTAACATTTTACCTATCAAGTGTAATGCTTAGACCATCACTGTTCCTCTCACGGTCAGTTCTCTTGTGCATTCACTCTTGTCGCCATGATTTCTGGGTATTTTAACTCACTTTTGGGGATCATGGGTCTGGTAAAAGTTCGCGGCAGACTCATGAAGCTTCAGGGAAAGATTAAAAGGTTGGATGAGACCCTAGATAGGGAATACAATGGCTGCACTTGGCAGAGGTCCCACTGCATCTGTATATATTTTAGCTACTGTGCCGGGGGTGCATCCACTGTTGGGCAGGCTGGGCGCCCCACTAATTTAATGGTAGGGGAAACACTGCTGTATATTATTCCCAAAATCAGAATAGAATAATGGTTGGATAACAATCACAAGCCTAAACTTAACATGAACTGTAAATGTATACCTTAATTCTGATTGGCTGATTGGAAAATAGTTCATTTTACCATGATGCTGATCCAGAAACATGTCGTACATAGTGAAATCACACTGACCATGTTTACTGTTAGTATTTACAGCAGAGGAAACAAGGTTTAAAATACCACAATAGCTAAACTATCCTGAGGTTGCATGTTTAAAAGAATTGACAATCTTGTAAATAATCTAATATATTCACATGTATTGTTTTTTGAAAAGGCATGAATTACATTTTGACTATTTTTTTAATATTGGCAG
Seq C2 exon
ATCTGCTCCTCCTCCTTCGGTTAGTGAGTGAAGATGATCACCAGAACATCATCAAGAAGAGAAATCTGCAAAGACAAGAGTTTATTGAAGGACCGTGAGAACATGAGTGATCCAGAACCCTGCAGAACTACACATGAAGATACTGAACAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096851:ENSDART00000156479:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]