DreINT0144790 @ danRer10
Intron Retention
Gene
ENSDARG00000092241 | si:dkey-240n22.7
Description
si:dkey-240n22.7 [Source:ZFIN;Acc:ZDB-GENE-110914-160]
Coordinates
chr4:75477666-75480847:+
Coord C1 exon
chr4:75477666-75477795
Coord A exon
chr4:75477796-75480250
Coord C2 exon
chr4:75480251-75480847
Length
2455 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
3' ss Seq
ATTTCTCTTTTTTTTTTAAGATT
3' ss Score
9.7
Exon sequences
Seq C1 exon
ACAGAGAAACTCCTGCTGAAGCGACTGAGCTCCACTATTATAAAGATGGCCTTTATTAAAGAGGAGTGTGAAGACCTGAAGATTGAAGACACATTCACAGTCAAACATGAACATGCTGAGCAACACACAG
Seq A exon
GTTGGCTTTCATTCTCACAGATCAGCTCAGTCATTTAATCCTAATTCAGATCTGCAGAATGAACGATGCTTTTGGAGACTGTCATATGAGCGTGATTTACTATAATCTGAGGACTTGATGAAGTGGTTCATAGTGTATATAACCAACAGTCATGCTTCATCAGTGTGAACAGCAGAGGGCTCGAGGCTGACTGATACTTCTGTGTGGAGTGATTGCCCTGACTCACGGCATCTGCCCCATGTCGTGCATTTATACTTCTGCTGCTGTTTGTCTTGCTCTGCAGTTACACTGCCGAAACACTAGCTGGCAGCAGGTTTTTATGTTCCTCCATGTCGAGTTTCTTCGCTGGTGTTTTGTTTTTTCTGAACTCTACCTTAAAGTAGCTAAAACTCAGAGGCGAGAACCGGCAGACGTTATGCAACTTTAATTACAAGGTAAACACAAACAAAAGTAGCTGGAGCTACTATCTCCCAACTGCATCTGCAACTGAAGAAACAAACTTAAATTATTTTAGCAAATGGCTGCAATATAACAAAGAGTGAAACATTTAAGGGGGTCTGAATACTTTCTGTACACACTGTAAATGACACACTTGGGATTGGTCTATAATGAACCAAGTAAGCCAGGTTTGCTAACTGCTAGCTTGTAGGTGTCTAATGCTGCGTTCACACCAGACGCGGAACGCTCGTCAAGCGCGAGTGATTTACATGTTAAGTCAATGCAAACGCGCGAATAGACATCTTTCGGTGCGATACACGCGAATGCCGCATTACGAATAGCGTGATACGCGCAAGGTGAATTGAGCGTTTTGCGCGTTTGACACGCTTAACGAGCGTTTCGCGCGAATCTCTCAAGTTTGAAAATCTGAACTTCAGCGGACATTCGCGCCGCGTTAACCAATCAGAAGCTTGCTCTTGTGGGGGCGTGATTGTGACGTAGAATCTGTTGATGGTGTCTCGGGGGAAATCCTCCAGGCGACACTGACAACAAGTCATCAAACTGGGCTGGGCTCAGTCAGAGGCACCGCTAAAATTCTCCGTCATCCAGGTTCAGTTTCTGGAGGAGTTTATGAGCTCACAGAGCTGGATGCATCTCTGAAAGGATGTAGTGGACTCAGACACGGCACTAAACGTATCGACACTAGTTTTCAGTCTTCATAAAGCACATAAACACTGTTATTTTCTTCATAAAACCCATGTTAGCCATTTAGCCATGAAGCTAGAGTCACCAGGCAGACAGAAGCCCTGCCCATCACGCAAATCCGCGCCTGTTCTGAAGTGAATTTGACGCGCGAATGAAGCGGATTTCACGCCCGAATGAAGCGGGGTTTGACGCGCGAATGAAGAGAGTAAACTCAAATGTTCACGCGGCAATTTACGTGCGAATAGCGGGATTTATCCACGCGTTACGCGTCTGGTGTGAACACAGCATTAGGTGCTTTCATACCTGCCTTATTTAGTTTGATTGAATCGCACTAGAGTTCGTTTCCCCTTTTGGTGCGGTACGTTTGGGCAGGTGAGAATGCAGCAAGCGTACTCGAGTGCCCACCAAAAGCGGACCAAATAAGCGTACCGAGACCTGCTTGAAGAAGTGGTCTCGGTACGCTTTCAAACGAACCCTGGAGCAGTTCGTTTGTGGTGAGAATATGATCCGTACTAAAACAGGTCCAACCGCAAAAAGTACTGAGCCTTTTGGACTAATCCAGCTGCTGTAGGCTGATGCGCTGTGCATTATGGGATATGTAGGAAAAATATTTGTTGACAGCGCTTTACCAACAGAGAGAGAGAGAGAGAGGAAAACATTACCTGATGGATCGTTGGTAATATTTCCGCAAGATGACCACGTCGCAGTTTAGCTAAATTGACTAACGCCTCCTCCTGAAGTGACGAGCGATGCATTAAACACTGTTTTCCAGCCGCGGCCGCGCTTCATTCTCGAAATGTATAGTTTGTCTAAAGCAGGGATACAATCAGCCAGCGCAGTCGTCCCTCCAGAGTAAAAACAACATTTCGTGTCTGCCGGTTTTGTTTTCTTGGGGGAGTTCTTTGGCATTTTCCCACACGAGAAATCTAACTAATCAATAAGCAGTTTAGGAAATATGTTCAACAACATCTGGCCAATCAGAGATGAGGATTTTGTCAGATGACTGCATTTTGGTTCGTTTCAACTGGTTCAGACCAAAGCCAGCAGTGTGGTGTGAAAACGACCCAAAGACGGCAGAAGATGCAACAATGTATCATTTATTGCGCTTGATCCGGGACCAAATGAAGCGAACTACAGATGTGAAAGCAGCCTTAAAGAAGACGACAAGTAAAAATCTAGAGGAAACCACTCTTTTATTATTATTTTTAGTAAGATCTAGCATGTCTCTTGGTGTTGACGCTGACCTGCGTTTATGTTGGTGTTTTGTGCCTTCTAAACTTGGCTAATATTGTATTTCTCTTTTTTTTTTAAG
Seq C2 exon
ATTTGTTGGCGCTGAAAGAGGAGAGGGATGAACTGAATGAAATGAAAGAGGAAGATCAATACGAGAAACGCCATGTGATCTGTTGTGATTGTGGAAAGAGTTTCAGTCAAAAACGAAACCTGGCAATCCACAGAAGAATTCACACTGGAGAGAGGCCTTACACCTGTCAGCAATGTGGAAAGAGTTTCACTCAAAAACAAAACCTTAAGGTCCACATGAGAATCCACACAGGAGACAAGCCTTACCAATGCCAAGAGTGTGGAAAGAGTTTCATTGATAAACAACACCTTAAGGTCCACATGAGAATCCACACCGGAGACAAGCCTTACCAATGCCAACAGTGTGAAAGGAGTTTTGATCGTAAAGAAAACCTTAAAGTCCACATGAGAATCCACACCGGAGAGAAGCCTTTCACCTGCCATCAGTGTGGAAAGAGTTTGAATCGTAAAAAAAACCTTCAGGTCCACATGAGAATCCACACTGGAGACAAGCCTTACCAATGCCAACAGTGTGGAAAGTCTTTTAATCGAAAACAAAACTTTCAGGTCCACATGAGAATCCACACTAAAGAGAAGCCTTTCTCCTGCCATCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092241:ENSDART00000150848:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.166
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0041217=LIM=WD(100=21.0),PF134651=zf-H2C2_2=WD(100=13.0),PF134651=zf-H2C2_2=WD(100=12.5),PF122303=PRP21_like_P=WD(100=26.0),PF134651=zf-H2C2_2=WD(100=13.0),PF051298=Elf1=WD(100=34.0),PF134651=zf-H2C2_2=WD(100=13.0),PF134651=zf-H2C2_2=WD(100=13.0),PF134651=zf-H2C2_2=WD(100=10.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]