DreINT0144958 @ danRer10
Intron Retention
Gene
ENSDARG00000028784 | si:dkey-24p1.6
Description
si:dkey-24p1.6 [Source:ZFIN;Acc:ZDB-GENE-060503-67]
Coordinates
chr15:38425613-38425876:+
Coord C1 exon
chr15:38425613-38425703
Coord A exon
chr15:38425704-38425791
Coord C2 exon
chr15:38425792-38425876
Length
88 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
GATGATTTATATTTCAACAGGTC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GATGATGTCTTTGATTTATTATGTGATGGCTGCAGAGAGTGGTTTTGAAGCGGCTCAGTTTAATGTAGCGTACCTGTGTGAACTCAACTCC
Seq A exon
GTGAGTCTGTTAGAAACACAAGCTTTACTTTCAGCTTAACATCTTCCCTCCACTGCCTCGCTCTGACGGATGATTTATATTTCAACAG
Seq C2 exon
GTCTCTCTGGATCCTGCACTTGCCACTCGCTGCATGTTAAGATATTATAATATGTCAATACAAGCTCAAGATCCAGTTCCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028784:ENSDART00000129941:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(8.2=13.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTTGATTTATTATGTGATGGCT
R:
AGGAACTGGATCTTGAGCTTGT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]