DreINT0145028 @ danRer10
Intron Retention
Gene
ENSDARG00000094427 | si:dkey-253d23.8
Description
si:dkey-253d23.8 [Source:ZFIN;Acc:ZDB-GENE-050208-568]
Coordinates
chr22:9874571-9877108:-
Coord C1 exon
chr22:9876972-9877108
Coord A exon
chr22:9875227-9876971
Coord C2 exon
chr22:9874571-9875226
Length
1745 bp
Sequences
Splice sites
5' ss Seq
TAGGTTGGT
5' ss Score
4.39
3' ss Seq
TTCTTTTACTTTCATTTTAGACT
3' ss Score
9.16
Exon sequences
Seq C1 exon
AGTCCTCCTGCAATAAAGCTTTACCAGTAAATGCTGAAATAATTCCATCAACCAAGAAGTGAAGCAAATTTTGTGATAGAACATGAGTGATCCAGGAGCCTGCACAATAAAACAGGAAGATACTGAAGAACAAATAG
Seq A exon
GTTGGTGATTTATTTTATTTTATTTTTTTACCTGATTTTTTTTCAGATGTTTATATGAGTTCACAATTCAAACATACTTATTTAGCAGCCATGGGCTGGTATAAGTTTCTGGCATTATGATAACCTTGGATAAAAATATCACGGTTTCATAGTATTACGGTCCTGTGATTACTGATCTAAAATAAGTTCTTTTTAAATGTCTGGGTAGCTAAACTTTTCCCCCATTTAACAAAATACATTTTATTTTAGAAAACATTTATAATATTTTGGAACAGTAAACATGTCTGGCTGAATAACAAAATAAATCATTGCCTTCAGGGGTCTGTTCTTCATACCTTGCTTAAATGATCTAAGATGATTTGGCAGATCCTGGATCTGTTCATCTTGATAACTGATCTCTCACTAATTTGGTTCTTCAAACAAGTTTGTGAATCAGATTAAAATGTCTGGATGAACTGATCTGAGATCGCTGCATGTGTTGTGAAGGACTGATCTATCGAGCAGTGTAAATACATCATCTGAATAATATTCAATTATCCATGTGAGCTAAATTACATTTTCTCAAAAATAGCTCAAATATGTTTTATCGCAGTTAGTCAAACCATGATTTTTATAGCTGTAGACTTGTGGAAACCTGTTTAAAAAGTCACACGAGCTGGATAATATTGATATTTTCCAGTGTGTGTGTTACATTTCGGTTCACTACCGGTGTGTGGTACATTCTACGTCACTTCCGGGGTGTGGTACATTCCCTTTCCGTAGGGAATCTGTAATTGTAAATTTGTTTCGGGATTTGTAAAAGTGTTTTGCGTCTTGTTAATTTGTTTTCTAAAATGTAAATTAGTTTCGTCCTTTGTAAAATTGTTTTTCCTGTGTAATTGTGTCTGATAATAGGTAAAAATGTTTTTCAAAATGTAAATTTGTCTCGAGCTTTGTAAAAGTGTTTCAAACTTTGCAGTGTTGTTTTGCACTTCCCGGCCACCGTAGTAAACGGTTTGTTAAATATGATACGCAATAACTTTCCACCTTGTTGTGGGCTGCTAGCATGGCCCTTTAATGTGTCAAGAGCAATTTATTTAGTTTTACAGTTAGAGCGGATTTTCCTTATTATATTAGTATTATTGTAGCCGGTTTTTTAATCCGTATAAAAAATAATTGGATGTTTACAAAAGCATTTTGATATAGGTAAAGCCGTCTGCAACTTTTATGAAGCATCAAATAACCATCATATTAACCTGGATCGTGTCAAATTGTCAATAACCAAATCCAGCTAACTGAGTAATCCACGTACGAAGAACAGACCCCAGGTCTCTTTGTTAGTTTTAAAAACACTGATTTACTTACAACACGTTTTAAAAAAACACACATTATAAAACATATACTTTAGGAACGGTATAACAGAAAATTTAGACTTTTCCAAACTGCGTTAAACCTTGAAACTGGTTATCATCCCACGTCTATTATTTAGTAGTTTTTACTACAGAAATGATGATTGATTAATGTCCCTTATTCAAATGAGTGCTTTAAAATGTTGATATTTGCTAATATTACGTCAGGAAATGCTTAACTTTGTCTATTGTATTGTCAATTTTGCTTTGCTAAAGTTTGCCACAGCATTTTACACGATAAAATGTGCTATATAAATCCACATCATGCACTACTTGTAAAAATCTGTTTTTCAGAAGTTTTTCAAAAGGTTGGGGTTAAAATTTCTCTCACATTTCTTTCTTTTACTTTCATTTTAG
Seq C2 exon
ACTCATTAAAAGAGAAAAAAGAGATTGAAGATCTAATTATCAGGGGAGAGAAACATCACATAAAAACAGAAGAAAACCTTGACAGTATTTCATCAATAAGTGAAGACAATCCATGTTTCACATGCCCTATGTGTGCAAACACTTTCTCATGTGTGGAAAGTCTTAATCTTCACATTAAGATTCATAAAGAAGTGAAGCCACACACATCTGATCAACATGAGAAGATTTCCAAAACAGAAATTACAGATAATATAAAGGTCCATGCTGAGGAAACGGTGTACAATTGTGATCAGTGTGACAGGACTTTCACAGATAAGAGAAATTTAGCCGCACACATGAAATTTCACAGCGGAGAGAAGCCCTTCATGTGTGATCTGTGTGGGAAGAGTTTTCTTTATACAGGTACATTAAAAAAACACCGGAAATTACACAGCGCTGTGAAGAATCAAGTCTGCTCCAAGTGTGGCAAGAGCTTTTTCACATTCAGTCAATTAAAAATCCACCACACAGCTCACGCTACAGAAAAACCTTTCAAATGCCCTGACTGTGGCAAGGCGTTCAAATCATTACAGTGTCAACGAATACATGAGATGATCCACCGTGGAGAAAAGCCATACAAGTGTGATCAGTGCGAGAAGACTTTCAGACTGAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094427:ENSDART00000105936:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138941=zf-C2H2_4=WD(100=11.0),PF134651=zf-H2C2_2=WD(100=9.6),PF105374=WAC_Acf1_DNA_bd=WD(100=40.2),PF134651=zf-H2C2_2=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=10.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATGAGTGATCCAGGAGCC
R:
TTGTACACCGTTTCCTCAGCA
Band lengths:
342-2087
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]