DreINT0145305 @ danRer10
Intron Retention
Gene
ENSDARG00000097743 | si:dkey-276j7.2
Description
si:dkey-276j7.2 [Source:ZFIN;Acc:ZDB-GENE-131127-420]
Coordinates
chr6:12081580-12082835:+
Coord C1 exon
chr6:12081580-12081758
Coord A exon
chr6:12081759-12082794
Coord C2 exon
chr6:12082795-12082835
Length
1036 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TGAGAAATGTTATCTTTTAGGTT
3' ss Score
8.27
Exon sequences
Seq C1 exon
CAGAGATGTCGACGACACACACACTGAAGATGAGCGCTTCTGTACAATACATCAGAAAACTACTGGGCAAAAGCAGCTGCGCCACAAACAACTTGCTAAACACTGGACACAAAATACAAAGGAAAACTAGTGACTGTAAAACTACCAAAAACAAAGACGGAAAAACCCTTACAAGAAAG
Seq A exon
GTAGGCTAAGTGACTTTTTCTCATTGACTTTGCACCGTAAAAATGTAACGATTAAAAAGTCAAGACAACAAATATGTTTATGCTGTTTTAACTCATTTAAATAAGTTTTTGGTTTCAACATTTTAAAGTTATTTTTACTCAATTTGATTGATGTAAGTTGATATGACTAGAAAAGTTCATTTGATTCAACTAAAAAAATGAGAGCAGCGAGGTTTTTTACAGTGTGAGGCATTTCTTAAGTTTATAACTATTCTAATATTTTTTAATTTGATATTTATAAGTAGTTGATAATCTAATGGTAGTATGGATGTTAAAGCTTGTACTTATATTTAGTATTTAAATACATTTCTTTTATGTGTTCTTGTTGAAAAGTATACACTATAAATGGTGATTACTTTATTTTAAAAGTAATTTAAAAGTAGGTTTAAAACATTGCCTAAAAAATGACAATTTGTAACTTGGAACAGTTAAGTTGACTTCATTTTATATAGTTAATTTACTTAATAATTTTAAAACAAGGTTTACTCCACTTTTTTAAAGTAAAGTCAACTAATTTCTATTAAGGATTTACTCACTTTTTTAAGTAAAGTCAACTTATCGCTTTGCAAGTAAAGGGTTTACTCACGTTATTAAGTAAAGTCAACTAATCGCTTTACAAGTAAAGGGTTTACTCACTTTTTTACCTAATCACTTTTTATATGCGCATAATTAAATGAAGTATGCCTCTACTTTGGTTTATTAAATGTAACTGTAAATGTCTATGCCTATGGTTTTTAATTAGAATATGCATATAGAAAATTCTTTGTAAGTATCTTTTTCTATTCTCGTATTTTATTGTGAGATGTATATTTTGTACTAATTCTTGTATGTAAACAACTGAAAACAAAAATTAATAAATTGCATGAGATAACATATAACTAAACCCATTTGCCAAATGTGATGAATGAATTAATATTCTTTACTTTTGCGCCATGACACTGTAAAAATAAAAGGAATTGTATTTTATTAATTAAAATTGAGAAATGTTATCTTTTAG
Seq C2 exon
GTTGTGCAAACTCAAGATAAGACAGCAGAGCAGTGCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097743:ENSDART00000156854:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCGACGACACACACACTG
R:
TTATGCACTGCTCTGCTGTCT
Band lengths:
214-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]