DreINT0145307 @ danRer10
Intron Retention
Gene
ENSDARG00000097743 | si:dkey-276j7.2
Description
si:dkey-276j7.2 [Source:ZFIN;Acc:ZDB-GENE-131127-420]
Coordinates
chr6:12082922-12083326:+
Coord C1 exon
chr6:12082922-12082976
Coord A exon
chr6:12082977-12083259
Coord C2 exon
chr6:12083260-12083326
Length
283 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GCTCTTGTGTCTCTGTGCAGGAT
3' ss Score
10.61
Exon sequences
Seq C1 exon
GAAAAGTGTGATATTACGAAGAACAGAAAATGAAACTTTTGGCTTTGAAATCCAG
Seq A exon
GTAACCTCTTTACTCATGCAAACACACACACACACACACACAATCTCTCTCTCTCTCACTTTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCCCTCTCTTCCTCTCTCCATCCTCATCATCTTTCCTCCGTTCATTCATTCATTCATTCATCCAAGCGTTGCGCTCCTGCCTGAAGGCTTATTATCTGTCAGGGATAATTGGATTTTGTATGATGAATTGATTGGCTCTTGTGTCTCTGTGCAG
Seq C2 exon
GATCTGGTCCCTTGTGTGTGTTTTGTGAAGGAGGACAGTCTTGCGGAGAGCAGTGGGTTAATGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097743:ENSDART00000156854:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(21.6=84.2)
A:
NA
C2:
PF0059519=PDZ=FE(29.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]