DreINT0145643 @ danRer10
Intron Retention
Gene
ENSDARG00000058546 | si:dkey-30c15.12
Description
si:dkey-30c15.12 [Source:ZFIN;Acc:ZDB-GENE-060503-920]
Coordinates
chr18:7453261-7455791:-
Coord C1 exon
chr18:7455649-7455791
Coord A exon
chr18:7453486-7455648
Coord C2 exon
chr18:7453261-7453485
Length
2163 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
TAGGGTTTTTTTCCCTGTAGATG
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTATAAGCTGAGAGGAGACATTGCAAACTGGCTGGAGATCACAGAAGACACTGGACACATCACAATCAGCAGTTCGCTGGACAGAGAAGCTAAGTTCATAAGAGATGGGCAGTACAAGGTCTTAGTACTCGCATTCGATGATG
Seq A exon
GTAATTTGAGTAAATATCTACAGTAGATGCTTAAAGATTTATGGATGGACTGGCACTTATGAAATTTAAACAGATTTTAAAACACTGGGCATAGTGCAACTAAATGACACGGCAAAAGCACAGAAACATGCCTCCTGTCATGGTTTTGTACGTAAACAAATATTAAACCTTTCTGAATCTGATATTCTCCAGCTTAATAAAATCACATTTTGAAGCTAACAAATCCTCAGCGATCCTGCAGGTGGGCCGAGAAATAGTTTAAAATTAACTCTCAATATTATACTATCAGTTTTGGATTTCATTATTAATATGCTATATTAAAATGATCAAAGTTATCTAATTAATTACTTCAAACTCGGCGCAAAACAGCCCCATGATCGCGTCTGCAACCAGTACACGTAAATCAAGTGAAAAGTGAAAGTCTCTCTTTGTGTATTTTTGTGGGAACTATTTAATTTATCCACATATTTATCCAAATTAATGTCCTGTGAGTGTTTTATAACCGACGTGTGACCATACAGGAGGATCTAGCGAGGCTCAATGGTGTTTCTGCCATAGAATGTTAAATAAACTTGCATACTGTATGAGCTTCAGACGTGCTCTGGCGGAGCTGTTCACTGTTCCTGTCAGCGATCTCCCAATAATATCCAGCTGCAAACCCAGCCGCCATCAGATTGATGCGTTTCAAAAGTTTTAGGGTTTAAGGATTTAAGTTTAAATGAGCATTTTATACAAACATTTAAAAGAAGAAAAAAAGTTGGCCCTGAAGTGAAAAAGGTTGAGAATCCCTGCAGAATAAAACTTTTTATTTTTAAATTTTTAAAAACTTTTTCAGCTGCTTTGACTTATCCAAATTGTAAATAATGGCAAAAATCTGTGCAAAAGTCAAGTTTTTGTTCCACTATTTAAAGCAGTTTGCTCAGAATCTGCAGTTCTAACTCTTATAGTGATTATTAAACTCAGAAAGCAAATAATAAACTTGTCTTTTTCTGAAATAACGTGTTCTTCATCACTAAAATTTTTAAGCAATGTCCCCCAATAAATTTGTCAACTTCAATCTGAATTTGACAGACATTTTCAATAAGGTTTACATCAGGAACCTGGGCATGCTATTTCATTATTTCTCCAATACCCTCAGGAAAGTTTAGTCTTTTGTTTAGTGTTATTTTGAAATTATTATTCATTCAATTGCTGAAAGCTTTGATTACTGTAGAGTGGGCTTTTCAAGTCCAAATTCTTAAGAGACTGTATGCCAATACAGTCCGCACTGTATTTGCTGAACGGTGTTTTAAACCAATGTTGGTGTTTTAAACGTTTAAAACGGTGTTTTAAACCAAACCTGCCCGGGTGTTTCAAGTATACCTAGTAAGACCTTGATTAGCTGGTTCAGGTATGTTTGATTAGGGTTGGAGCTAAAATCTGCAGGACACTGGACCTCCAGGAACAAGTTTGGTGATCCCTGCTCTACATGGTTCTGTCATCTTGTGCATCTGTCTTTTATAGATGACCAGCCTATTTGGGCTTGAATGTGTTGGAAAAGATGCAATAACGATTTGGAGTGACCATCTTTTGTTTCCACGGATAAAAATGATCATTGTTTGCCGTAAAATGGACAATCTAGCTGACATCTACTAAAAAATAGCCTACAGACTACAAATAACACTTTAATAGACAACAAATATCTCTTTTATTATTATTATTATTATTATATATATTATATATTATTATTATTTATTTGTAAATAATAATAATAATAACTGCAGAGTGGGCTTTTCAAGTCCAAATTCTTGAAAGACCGTATGCCAGAGATCGCACTGTATTCGTCGAACTGCGTTTTGAACCAATTAAGATCTTCTACATTGTCCTGTCATCTTGAACATTTGTCTATCATAGACGACCAGCCTTTTGGGGGGACTTGAATGTGTAATTAACATGGTAAAGATGCAATAAAGATTTTGAATGACCATCTTTGGATGGATCTACAGATAAAAAAGGCTCATATAATTTTCCTTAAAATTGACAACCTAGCTGAGTTCTACAGAAAAAAAAGAAACTCTTGAACAGCACAGTGGTGCTTAATAGCCAACAAATATCCCTGTTCTGATTATTTTTGTTAAATCAAAGTCTTTTTAATATTAATAAATAGGGTTTTTTTCCCTGTAG
Seq C2 exon
ATGATGAACCGGCCACAGGCACAGGCACATTCATGATTAAGCTGTTGGATGTTAATGACAACCCTCCTGTTTTGGAGCAGCACAAAGTCCAGATGTGTTCAACAGAGCCAAAACCTGTCCGTCTGACCATCACAGATGCAGATGAGCCAGAAAACGGCCCACCGTTTACCACAGAGCTCCATGAAGAGTTTAAAAGCAACTGGACGATCTCCAGCGACTCCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058546:ENSDART00000081386:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.373
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(49.5=100)
A:
NA
C2:
PF0002812=Cadherin=PD(15.8=20.0),PF0002812=Cadherin=PU(53.5=61.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]