DreINT0146483 @ danRer10
Intron Retention
Gene
ENSDARG00000091465 | si:dkey-66a8.7
Description
si:dkey-66a8.7 [Source:ZFIN;Acc:ZDB-GENE-131127-421]
Coordinates
chr6:37481769-37482284:-
Coord C1 exon
chr6:37482141-37482284
Coord A exon
chr6:37481910-37482140
Coord C2 exon
chr6:37481769-37481909
Length
231 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTGTTTTCACATTCTTCTAGATG
3' ss Score
9.78
Exon sequences
Seq C1 exon
ATACTTTAGTGGCCTGTTGTATCCATAATATGATGGACACATCTAATTGTGCCGAACAAGAATGTCAAAATGGAGAAAACAGTATGAAAAGGCTGTTCTGCAACCAGCTGTGAAGTGTGAGACTGAAGCAGGAAGAAAACAAAG
Seq A exon
GTAATAGCGAGCTAGCATGACAAGTCAAACGCGTTTTAAAAGTTCACGGATGAACGGTACTGAAATATCAGTTCTGTGTACCACAGAGTTCACTTAACGATTAAGTTTTGTGGTCAGCTTTTAAAGGAGTTGTAATTTGATCCTCGTTATTGACGATGTGTTTATCTGTTGTTTAGCTTAAACGCGACTGTTTAAGCGGAATAGACTCGCTTTGTTTTCACATTCTTCTAG
Seq C2 exon
ATGCAGTTTTAAAGAGTGTGTGTTTTTTACACTCCGGTAAACTTATGGAACAAATCCGAGAGGATGACAACCAAGAAGACTGGATGTCACGTTTACCAGAAAAACTGTTGGATATCCCTTTAACAAATCTCGCTATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091465:ENSDART00000153500:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.091
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTTAGTGGCCTGTTGTATCCA
R:
CTGGTATAGCGAGATTTGTTAAAGGG
Band lengths:
284-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]