DreINT0148512 @ danRer10
Intron Retention
Gene
ENSDARG00000068493 | si:zfos-411a11.2
Description
si:zfos-411a11.2 [Source:ZFIN;Acc:ZDB-GENE-131119-33]
Coordinates
chr15:88262-89984:-
Coord C1 exon
chr15:89843-89984
Coord A exon
chr15:88548-89842
Coord C2 exon
chr15:88262-88547
Length
1295 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CTTTTATTTTGTCTCTACAGGTA
3' ss Score
12.93
Exon sequences
Seq C1 exon
GACACAGTAATTATTCCCATGCTGCACTCTGTCCTAAGGGATGAGGGACATTGGGAAACCCCTTGGACATTTAACCCAGAGCACTTTCTGGACTCCAATGGCAACTTTAAGAAGAATCCAGCCTTTATGCCCTTTTCTGCAG
Seq A exon
GTAAATTCTTGAAGATCTTGCATGTTAATCCAGAGTAAGTCAAAGTCATCTTCCTTGCAACATCAACAAATACTACTACTACTACTACTACTAATAATAATATTAATACCAATATGAATGCAGTTAAGTGGTATTGAGTACTAAGAGCATTGTGAATCCTCTTCAAAAAAACAAAAAACAAAACAAAAAAAAACCTCTCTTTATGAATAATAAATAGTTAATTTGACCCTCATAGTCCAGAAGAGATTGCATTTCTTTTATTAAAACTGGGGCTTATTGAATGTAGAAAGAACAGCTGGACCTCTGTGCTCAACTCCTAAACTCTGTCATAAAACATGTTTATTTAGTCCACAGAACTCACATTTTCTAAACTGCTAGTACTTGCCAGATTCTCAATTATTCTGAAAAAGGTGTTAAACTTTAGGGTGAAGGGTTAGGAAAAGAGGGGAACATTACTGTGCCCGAGGTGCCACTGCAGAATCAGTCATATTTGCACTAGAGAACACTCCATGGTGAGTGAGAGTTCTGTGATAATGGTGCTTTGTTTACACATTGTCTGCGTGGGTCTCATGTGTCAGATTTTATTTGTTAAATAGGAAAACAGACTACACTTCCCCCTGGTGGTATGAAGACACAAGTCCTCTCATACAGACACAGATTAAACACACATTTTAGTCTGTTGCAATTACTTTAGTTTGATCATGTGTTGCCTTTTAGATGCAGATTAGATTCAGATGGGACTAGATGTGGTCAATGCAAGGCAGCAACACAGTTGGTTTTTGTCAACTTTAGTTATTTGGTGTTGGCTTGGTGTCTCCTGGCCCTAAGAGTGGAGGCTCGATCAATAACACTGAGCTTCTGCTGCTCTGTATGCAGCTGAAAAGAGCCAGGGTGAGCTACTAGAGGCCATTGACTCTTGGATTCTTCCCTTCTTCTTTTAGTTTAACTTACTATGTCCAACATTTTACTTCTCAAATATGCTAATTCCTCATTTGTAGTAGACTCACAATTGACATGTAGCACTGAAATGTAGCATACAAACATGCATCATGCCACGTAAGCCTCTGAAAAGAAATAAGTTTGAGGATGTGAAGATGTAGACAGTCTTTTATGGTTAAGGTCTCTGCCATTAAAGGGAAACACTGTATATATAAACAATATATTCGCAGTATACCATAAGACCAGGGCAATTGATAATATAAGAGTAGAGCTCCATGCAGAGTTGGCTAAAATGTACTTATCAAATTTTAAATAAACAGCATTACTGATCAGGGTCTTTTATTTTGTCTCTACAG
Seq C2 exon
GTAAACGTGTGTGTGTCGGTGAGTCTCTGGCTCGTATGGAGATCTTTCTGTTTATCGTGTCTCTGCTTCAGAAGTTCAGCTTCAGTAGTCCTAATGGTCCAGACAGTATAGACCCCAGTCCTGAACTCAGCAGCTTTGGCAACATGCCTCGACTCTATGAACTCATAGCATCCCCTCGCTGAGCAATGTGGAGATTGTAACATATTACATGAATGCAGTCATACAATACACAGAGAGAGTGACCACATGTTGCTGAAATGCACTTTAGAATGTAAGAGGTGGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068493:ENSDART00000099074:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGGGACATTGGGAAACCC
R:
CAGCAACATGTGGTCACTCTCT
Band lengths:
358-1653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]