DreINT0150333 @ danRer10
Intron Retention
Gene
ENSDARG00000017047 | slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-248]
Coordinates
chr10:10806296-10808640:+
Coord C1 exon
chr10:10806296-10806454
Coord A exon
chr10:10806455-10808570
Coord C2 exon
chr10:10808571-10808640
Length
2116 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
TCCTTTTCTTTTGCTTTTAGATC
3' ss Score
11.53
Exon sequences
Seq C1 exon
CAATGTGTGAGGTGCACAGCTCCATGGGAAAGACTGTTAAGCTCTTCGTCTCTGGTGAATGGGACCCTAAGCGGGTTCCTGTAGGAACAGAGCATCTAGACCCGCTCCTGGAGACCACTAGTACAATCCAGCCCAAACAACCAGATCGCAGCTTCACAG
Seq A exon
GCAAGTAGCATGCTCTCAAAATAGAAAAAAATCAACCTCCAGTTTATTTAAAAATTGATTTAATTGTGTGTTTTTAGTTTTAGTTAACTATAATATTGTTGAATATGAGTTAACAAAATTTCTGTGGTAAAAAGGGCATTACCAACTAACTTGCCAGAAATTTCTTAGCCAGCATCAGTCCTAGAGATAACTATCAAAAAATTATTTTAAAAATTATTTAATTGAGTTAAGGATTTCAACCTGTGAAGTTTGTTTACATAATGCAATGAAATTTAACACTTATAAACAAAAGATGAAGTATTTATTATTATTCAGCAGATTATTTATGATCATAACAGTCTTGGATAATTCAATAATAAGAAACATTACATGTTTTACTCTTACTTTTGTGCATTTTCATATTAAATAAGTAAAACACATACATGCACATTTCAGTACTTTGTGTACATACAAAACAAACAAACCATGTGTTTGTTTTGTATGTATAGTTGTTTGCATAATTACATAATTTAAATTGATTTGGCTCATGGAGCTTAACGCAGAAAACAGGAGAAAAATTTGGATTTGCTCCACAGGGCGAACCTGAAAAAAGTCAAAATATTCATAATTTTGCAACAACTAAAAAATTGGAAGCCTGTGGACAAAGGTCATATAACATTTTGTTTGAATGGCACTGGGATTAAAATAGCAGTTTAAATGGAATTAATTTGGGACATATTTTTTTTGTCTTGAAGGTCCTGAGAGGAACTTTATTGGGTCTGAATTTAGGTCAAATTCCACTGTTTGCATTATGGCTGCACAATATATTGTTTTATCAACAATATCGCAATGTGTGCATTCGCAATAGTCAGATCACAGCTTCTGTAATGTGGAGTTATGATTTTTATTGTTTATCAGTAATGAAGAACTGATGCCTGGCATTTCTATTACAATATGGATGTGCCGGTGTCAGACATTCCCAGGGATATAATTAGTCATTTTTGGCGAACAGGTGACATATCTAAAAAAGCCAGACATGCATTACAGGGGTATATTCACAACATAATACGCAACCGATTAGAAAATAATTTAATCAAAATTGAAACTACTTCATACGCTGACCATTCAACAGCTTAGTTCATGCACAGCAGGAGAGGTGAAATTTTAAAATAATCTAAAAATAACAATGATTACCGTCATTGTCTCTTTTCCCTAAAAGCCCGGTAGATTAATTGTTGTGCAATGAAGTATAGTGTTACTAACTGATGAGGAAACGAACATGGACAGTGCTTCTACATAATTCATTCAGAGAATTAACAGCCAGAAATGGGAAACTGATGGATTTGTGCCACATATTAGCATCATTGACCCATAACAATGTACAGTACCTATTACTGTCAGTATGTTTGTGTGCTTTTTATACCGTTTCTATTCTAATTTGCAGTTGAGTGGACAAAAAAAATAAATTGAAATGCAAATCAAAGTATGAAAAGCAGAAGTCAATAAATAGATTTTCCCTACCAGCAAATATTAATCAGACACCAAATATAAAAGCAGAAACTAACCCGCTATAACGTCGTCAGCAATGACTAAATCTCCAAAAGACAGACAAAAGCATTGTTGAATTTACCTCTGATATGGACATAAGGCTTATAAATTACTGAAAAACAGCTGCGGGTGAAGTATATTAATCGCAAGTCCTCAGTTTGGGATCATATTTCTATTTTGTTCTGTTGATATGTAATTCAAATATTAATAGCTTGAACAGATGGAAATATGACTGAATTTTGCTGCTTTTACGGCCCCCCACAGAGCTTGATCCACGCTGGCATTTGTCCCCTTGTGTTTTAGGTTTTGAAAAGAAAAAAAAAAATTCCACCACCCTGTCCAAACTTTTAGGATATCGGGTATCAGATTACCACAATCCATATGCACAGCGCTTTAGCTAGTTTCCCTAGCTCAAGCTTGACAGTCCTCCTGTGCGTAGCTACGGTTGCTAAGCCACGATTGGTGTGTGTCGGTTTTTGGGTGTGGCTTAGCGAAGGGTCAGTTGATCACAAAAAAATGGAATAAAAAAGGATCAGCATGCACAAGCATGACATATATTGTTTTCTTCCTCCTTTTCTTTTGCTTTTAG
Seq C2 exon
ATCGGCTGTTTTACATCTACACATCCGGAACCACTGGAATGCCAAAAGCTGCTATTGTTGTACATAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017047:ENSDART00000004181:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.2=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]