DreINT0150668 @ danRer10
Intron Retention
Gene
ENSDARG00000036864 | slc34a2b
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030709-1]
Coordinates
chr23:1066139-1069007:+
Coord C1 exon
chr23:1066139-1066160
Coord A exon
chr23:1066161-1068954
Coord C2 exon
chr23:1068955-1069007
Length
2794 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTTTTTTGTGTAAATGCAGGCT
3' ss Score
5.97
Exon sequences
Seq C1 exon
ATCACACACTCTCACAGCTCAG
Seq A exon
GTAAGAACAGAAACATCTCTCTGCTTTTACTCCTCCGGTTTAATAGAGCGGTGTGTGTGTGGATTTGCTTGTGCATGGCTCTTAAACATGAATTCAGAAGCTTTCTGAATCACCTTCTAAACTCGCAGTTACTTTTGTGTGTACTGTTTGCTTTAAGTTTTTAGTCTCTGAGCGCTCTCTAAATGAGACAGAAGTTTGTGTGTTCACATTTTTACTTTGACGTGTTGATCCTGCTTTTATGTCGAGCATTGGGTGTAGTGTTAGTCTCTGAGTGTGTTTCGTGTCTCATCTGGAGTGTGAGGGAGAGCTGCTTAATAACTCTGATTAAACTATGACTTCACTTTGTGCTGGCAATATTGATGTGCAAGTGGTCTGCTGACAGATTGCTCAGTATTTAAATCAGTAAACAGAGTGGGATATTAACACATTATAAAAGCTGAGAGACAGTATAACACAGTAATAATCCAGCATAAACCACAGGTGAGACTGCTTTGCTTTGCATTTTACTGCATCAAACTGTTTATTGCTTTAGAAATAAGATGTTGCATGCATTTTTATGGAAACTGTTTATTAAATAGCGTGTTTTATTGTTGATATTTTCTTATTGTTTTAATCGCTGTGTTCTATATAAGATGGTTTATGTTAATATTTACTTTTATTGTTTGTAATCACTGCATGGTTTCTTAATATGACCTTTAATGTTTATATTTAGATATGTTTAACTGTTTATTGCTTTAATAGTTGCTTTCTAAATAAAATGATCCTATGTTATTATATACTTACTTTTACGTTGTATTGTTTTAATCACTGCTTTCTAAATAAGACTTTTTATGGTAATATTTATCTTTTATTTAATTTTTATTGTTTTAATCACTGCATGATTTCAAAAATAAGATCTATTTTTGTTTACATTTGTGCATTTTTAACTTGTTTAATCAGTGCTTGATCTTTCCATGTAAATAATGTTTAAATCACCGCTTTCTAAATCAGATCTTTTTGTGAATATTTACATTTTTGTTTTAAACTGTTTATTGTATTTAATCACTGATATCTAAATAAGATGTTTTGTTTAACATAAAAAAAACAAACATATCTTGTCTAGGCATGGAAAGATAACCGTTTCCAAAACCACCAAACTTTTCTGCTATACCGTTTCTAAGGTGTAAGATTTTTTATTTATGTTTTTACAACAGTATTTCCAGCAGAAAATATATACAGAGACGCCATTTTAAATGGTAAAGAAATCAGTGTTTTTGAAACTAATGAAGGCAGCAGAAGTGAATGATTCACTTGAATTGTTTAGCCTGACTTGTTTACAGCTCCAAAATATTATAAATGTTTCTCAAAATAAAATATATTGTGTTCAAGAGGGAAAAAGTTGTAATTTTTTTACACAAGCTTTAAAAGAATATACAGTATTTTAGAGCAGTGGTACCGTGATATTTTTATCCAAGGTTTTCATACCGTCAGAAACTTTCCGGCCCATGCCTAATCTCGACAAACTATACATCCATGTACCATATATAAAATTTCAAGTCAGTCCTCCAATTCTGGGGCTGACTGGTGAGAATGTTAAACTACTTAGAGCCTTTAAACATTCCTTTCTTATCATTTATCTGAACTAAAACTTTTTTTTTGCATAAGTTTATCTATTACTCTATCCTTTGCATTTCAAAGGGATAGTTCAGCTCAAAATAAAAATCATGTCATAATTTATTCATCCTTTTCTTATTGCAGAGCAGTTTGAGTTTCTTTCTTCTGTTGAACACAAAAGAAGATATTTTGAAGAATGTTAAAAACCTGTTACCATGGACAATATTTGTTTTCTTCGAAACATCTTTACAGAAAACGATATAAAGTTTTGAAACCACACGAGTAAATTATTTTTTTTTTTGTTGAACTTTCGCTTTAACTTTTTGGTCAATGTTTTTAATTACTGCCTTCTAAATGAGAAAGAAACGTAAAAAAAAAAAAACTTTTCAGCTTGAGAGTTTTGTTTTGTGTCAAACTTTTTAACCACTTTTTGCTCAATAAAACAAACAAATCAGTGCTGAGCAAAGAATATATGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTACACTGTCAAACTCAACAGTCAACTTTGTCAAATGAGTGTAGTTAACTCAAAATTTAGTGAAAGTTAGTTCTACTCATTTGAAACGAGTTTTGAAAGTTAATTAAATACCTCATTACTTCATCTTAAATGGAGTAAGTTCACAGTACTCATATACATTAGTTTTTAACTCAAACGGTTTGTAACAATTGGTTTCCACATGCGGTTGGAGTTGCCTTAACTGACTGGGTTTTACAGTACTCAGTTGGTTTGAGTTCTCTTCATTTATTGGGTTTTACTGTGCTCAAATTGCTTCATTTACTCAAATGGATTAAGTTCACAGTACTTATTAGCATTCGATTTTGAACTTAAATGGTTTGTTGCAATCGGTTTCCTCCTCAAATGGTTTGAGTTACCTTCACTTTTTTGGGTTTTACAGTGTATATATATTATATATACACAAACTTTTATTTTGGATGTGATTTATTCGTGATTAATCTTTTCCCAGCACTAGAACAAACTACTTAAACACACACACAAAAAAACAAACAAACATACAAATAAATAAATCGCTTAGGTGACAAAAATAAAACCTTATCTTGACCAAATATCAGTTAGTATGTTTTTTGTGTAAATGCAG
Seq C2 exon
GCTGATGGCTCCTCTGGCTGAGACTCATCCCGCCTCGCCGCCACCGGAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036864:ENSDART00000053527:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]