DreINT0154659 @ danRer10
Intron Retention
Gene
ENSDARG00000005186 | sp4
Description
sp4 transcription factor [Source:ZFIN;Acc:ZDB-GENE-031202-3]
Coordinates
chr19:2616713-2621090:+
Coord C1 exon
chr19:2616713-2616798
Coord A exon
chr19:2616799-2619682
Coord C2 exon
chr19:2619683-2621090
Length
2884 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
TTGTGTGTGTGTGTGTGTAGGAT
3' ss Score
9.68
Exon sequences
Seq C1 exon
ATCAAAAGAAGGAAGCCATGGCCACTGATGGGGGGAAAGCCAGTGGAGGTGATGGGGGTACGAAAGGGAAAACTTCTGGATCACAG
Seq A exon
GTATCAGATGTGTGAAGTTTGGGTTGAATGGGGTTTTGTGGTGCCCACTTGTTTCTGCAACTGAAAGACAGCACTTCCTGATTATTGCAGGGCTCTTCGGTGCACAGTTACACGCATACACACTGTTCCTGTCTAAAACTGCTGTTTGAGTTTGATAAAACATTGGTGAACTGTGTTGGGTAACACTTTTAATCTTTAGCACTTCAGAAACTGAACAAATATATCATTATAATCAATTTGCACTAACACACAGAGGAGTCCAAAAGTCTGAAGCCATATTGTTTTGTTTTGACGTCTGAAAACTGACAAAGACAAAGTACCGAATGAAGAACAAACATTTAAGAAACGTGTGTGTGTGTCTATATATATATATATATATATTAGCCCCCCTTAAATTTTATTTCTTTTTAAAATATTTCCTAAATGATGTTTAACAGAGCAAGGAAAATTTCACAGTATGTCTGATAATATTTTTTCTTCTGGAGAAAGTCTTATTTGTTTTATTTCAGCTAGAATAAAAGCAGTTCTTATTTTTTTAAATCCATTTTAAGGTCAATATTATTAGCCCCTTCTAGCTATATATTTTTTTCGATAGTCTACAGAACAAACCATTGTTATACAATAACTTGCCTAATTATCCTAACCTGCCTAGTTCACCTAGTTAACCAAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGAGTCTTTAAGAATATCTAATCTAATATTATTTACTGTCATCATGGAAAAGATAAAATAAATCAGTTATTAGAGATGAGTTATTAAAACTATTATGTTTAGAAATGTGTTGAAGAAATCTTCTCTATGCTAAATATATATCTATATATATATATCTATATATATATATATATATATATATATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATAATGAAGTTTATATATAGTAAGCATAATTTAGTAAATATAACAGAAGAAAAATGTTTTGTTCATGTCAGAAGTCATTAAAACAAAAATGTAAAAACTATTAAAAAACATGTTTATATAAAAGACAATAATAATGTTTACTTTACTTGCGGAGTCCAAAAGTCTGAAGCTATATTTTTTTGGTTTTGACATCTGAAAACTGACAAAGAACCAAATAAAGAACAAACATTTAGGAAACTGGGCTGGTTTTTGTTCACTAATTAAATGTAACCAAATTTGTGACAACAAAGTGAACATTATAAAAATGTATATTAATAACAGTTATTTAAGTAATTAAATTACATTTAATATTTGTTTACATTTTGTGCAAAGCTAAATATACTATATATGTAATCTAGAATATAGGCAATCTATTTTGGTGCATTTACACTAAACAGATTTATTAAACAGATATAGTTATTAAAATAATATTTTAGACACCAAACTTATTTAGATATTAAATGATAATACAATTAAATTCCAGCAAAATATTGCAAAAAAGAATTACAAACTACAAAATTTCAACAATTTTTTTTTAAGCTTCTCTTGATTTTTCCTCTTTTGTACAATTTGTATTTAATATTTTTATATAACATTGACCCCCGGTTTCACAAACAAGGTTTAAGGCTAGTCAGGATTAAAGTTCATGTTTGAGCTGTCTCAACTCAGAATAACTTGTGGTGAGATGTCTTAAAATATGTCAGTGTCATTTTTTTGTCTCCAGGTGCACACCAGTAATATTTTTCTAAGGCCATTTTCATAAATGTGTCTTAAACAACCTTATTTAACTAAGGCCTAGTCCTGACTTAATCTAGTTTTTGGACCATTATCGTAAGTTATTTTGTCAGATAAGCTTCAGATTTGGCTTCAGTACTGCCTAATCTAATATATATGCACACATATTATATTGTAAAGCTTCCTATTAAAAATATGAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTAAATGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTATATAAAATAAAGATTATATAGTAAGCATCATTTAGTAAATATAACAAGAGAACAATGTTTTGTTTATGTCATCAGTCATTAAAACAAAAATGTATGAACCATTTGAAAATATGAAACATATAGATAAATATATATATATACATGTAAATACGTGATTACAGTAAGACGTTTTGCTGTGGTTTAAGCAAATAATATAAACAAAATGTGTTTTTTATTTTTACCTTTTCATGTTAGGTGTAATTTGTAATCTAATGTGATATACATAACATTAATAAATATGAAAATGATACTTAATGTTTGTTCATGTCAGCATCAGTGCTGCTTTAATATAATAGTAATAATACCAGCAAATACAAGCAAAATATACGTTTTCACTCAAATATATATAACTAATTAATTAAGTAAAAGTTTTCATGATGACTCCAGTGCTGCCGACTACAGCAAACATATATCATCTGAAGTATTATCTGTAATAGTGATTCACTGGTGATTTCAGACGTTTTACAACCCTCAGTACTTTATATGTGTGTGTGTGTGTGTTTACAGTATTAATAAGAGATTCTTGCAGACATCACAAAAGGTATCTCAAGATGTAACCTTGTACAGGCTGTCTGGTAACAGGAAATACAAGAATGCTTTAACAACACTCAATTATAAGATAGCTTTAACACAAGAGCCTCTGAATTATTTCCATATTTGTCATGAAGAGTTTCTCTTGAGCCCTTAATCGGGAAATGGAGAGGCTGTGGTGCACACACACGTACGCACACACACACTTACTCTTCCTGTGAACCCGCCCACATGTGCTGACACTGACATCTCGCTGTTTGTGTGTGTGTGTGTGTAG
Seq C2 exon
GATGCACAGCCGTCTCCTCTTGCATTGCTTGCAGCGACGTGCAGTAAAATCGGAGGTGTTGGCGCTGAGGGTCAGGCGGCTGCACAACAGCAGATAATAATCGACCCGAGCCAAGGTCTGCTTCAGCTGCAGAACCCCACACAGCAGCTGGAGCTGGTCCCGGCACAGCTCACCGGAAACGGCTGGCAGATCATCGCCACCTCCCCTGCAACCGCAACCAAGGACAGCATTCAACAGGCTGGCGCTAATGCAGCGTCCAGCGAAGCCGCAGCCGGCCGGAAAGTCAAGGCCGTCGGCTCTAATAATGCAGCGCAGCAGCAGTTTCAGATCATACAGGTGCAGAACCTGCCCAACTCGTCCGGCGGGATTCAGTATCAGGTCATCCCGCATCTTCAAACCGCTGACGGACAGCAGATCCAAATAAGCCCCAGCAACCCCGCAGCCTTAAGCGTTCAGCCCGAACAGATCCAGCTCATTTCCACCGGAAACAACCAAGCCATTCTGGCCACGCCACAGAGGACGGGATCCGCCAGCATCGTCCAAAACCAGACCATCCCGCTTCAGATCAGGCCGTCATTTCCTCTGCAGCTCCAGACCATTCAGGGTACGCAAGCACCAATGGTGACTACATTACCCATAAACCTCGGCGGCGTGACTTTGGCTCTGCCGGTGATCAATAACGTAGCAGGAGCCGGCGGTTCTGTTCAGCTTCTCCAATCCAGCGATGGCAGCATCTCCAATGGAAACCAGCTGATCACGACGGTCACAACAAGCACAGCAGATTCCACAGGGAGTTCGACCTCCACCACGACCGCCACAGGAAGCGATTCGGTCGTCGTGACTTCAGCTGATGGACTATCTACGACGTCCATGGTGTCCGCCGAGAGCCCAAAGGATAATGAAGCAGATTTAACCCAATCCAACGGCCTCCAATCCACATCTGAGCAGGCCGGACAAATCCAGCAGTTCCAGATCGTGGGCCACCCGGTGCTCCAGCAGATCCAGATCCAGTCTCCGCAGCAGCAGGTGGTGCAGGGCTCCATACAGATCCAGCCCGGGCAGACTTTACAGCCGGTCCAGCAAAACCTCCAGCTGCAGGCCTTCCAGAACCCGGCGCAGGTGCTGATCCGGACGCCCACGCTCACGCCGTCGGGGCAGATCAGCTGGCAGACGGTGCAGGTGCAGAACGCAGGCATGCCCCAGCAGCTGACGCTCGCCCCGGTGGCGTCCAGCGCAGGCGGTGGGACGTTTGCTCAGATTGCTCCGCTGACGCTCGGAGGCTCACCTATCACGCTCAGCGCCGCGCAGCTGCCCGCGGGCTCAGGGGTGCAGACGGTCAACATTGCCGGTCTGGGGGCGGCTGGAGTGCAGGTGCAGGGCGTCCCGCTCACCATCACCGGTGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005186:ENSDART00000097528:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.325
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]