DreINT0156157 @ danRer10
Intron Retention
Gene
ENSDARG00000029252 | ssb
Description
Sjogren syndrome antigen B (autoantigen La) [Source:ZFIN;Acc:ZDB-GENE-030131-223]
Coordinates
chr6:3556227-3556871:+
Coord C1 exon
chr6:3556227-3556294
Coord A exon
chr6:3556295-3556793
Coord C2 exon
chr6:3556794-3556871
Length
499 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GATTAATTAATTATGTTTAGTTT
3' ss Score
2.75
Exon sequences
Seq C1 exon
ACTTCACGTTCACTCGGCGTTGAGTGTGGCGTTTCATCGCTATCAGACAAAAACAGAGCGCAAATAAA
Seq A exon
GTAAGTATGGTGATTTTTGTAGCACTACTTCTTTTTTGGAGTTTACTATGTTTTGAAATTTCAGGTCGGACAGTGAGAAAACAGTGACAGAGCGAGCGCGCGACGTTTTTTCAGTGTCATTCTGCGACATGTGGCGCGTACATGCTCCATAAACGAGTATTATCCCAACATTTATACTATTTTTTTGACTCAATTTGTAGCGTGCAGGCATGTTATTTTTAACGCTCTTTATTTCTGGACATTTGAGTTTAAACAGTGAAGTGTGGATGCTAAAATAGAAAGTGCACAGATCTGCTGTACTCACACGTGGTTTGGAAATCAAACTCGCTCCGGGTTCAGAAGTTCATACAGAGTTTATATTACAGAGCATTCAGTCTCTGTTTGAATACTATGGCTTGTGTGATGTGCGTTTTTAAAATAATTCAAAGCAGAGACCGTTTGTATTCTTGCATTTCTGCACTTCCTTTTTTTAATTAATTGATTAATTAATTATGTTTAG
Seq C2 exon
TTTGTTGTGATTCTAGCAAAGATGGCTGACAATCAGGAAATGTCTCCCCTGGAGAAGAAGGTGGCGGAGCAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029252:ENSDART00000041627:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.526
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0538312=La=PU(8.5=26.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]