DreINT0156936 @ danRer10
Intron Retention
Gene
ENSDARG00000005318 | stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:ZFIN;Acc:ZDB-GENE-041114-64]
Coordinates
chr9:38239947-38241019:+
Coord C1 exon
chr9:38239947-38240022
Coord A exon
chr9:38240023-38240923
Coord C2 exon
chr9:38240924-38241019
Length
901 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
GCTGTAATTTCCCTGTTTAGTTG
3' ss Score
6.94
Exon sequences
Seq C1 exon
TGCAAAGGATTGTCTGAGGTCGATCATGAAGCGAGTAAACCACAAGGTCCCTCATGTCGCTATGCAAGCATTAACG
Seq A exon
GTGAGCTTCTCAGTTCCCATTGTAAAGCAAAGGTGCTGTCAAAATGGTGTCTACAGTGTACAAAACAATCTTTTGTCACATTGTTTACATTCTTGGGGATAAAATAGGAGGTATATGGTTTCTATAGCCATTAAAATCTAAGCTGGAATATAAGATAGTGAGCTTTAATAACTGGCACAGCACTTGAACATCTCTAGACTCTGCTTGTAGCTGTTTATAGAAATTTCCCTATAAACAGTTCTGCCTTTAAAATGTACTACATACTTGTAGACAGGTTTGACAAACACTAAAAATCACAATGCACAGTACACACAGTACAAGCATACTGTTTTGATGAAGAAATGTGTGTCGTGTTAATAGGTCTGATTCTTTCTGTCTGTCTGTATCTGCAGAAATGTATTACAAGGGAATGGAGTTCTTGAATTTAAATATTATTATTATTATTATTATTATTATATATTTTTGTCAATTATAATTAAATGCAATAGTATGAAATAAATACTTAAATTATTAAAATTATTAAAAATCTTTATTCACTCTGCATAGTTACTTATTTAAAAGTAGAAAAAAGTTTTAAAAGTGTGGAAGTACTGTTTGTACAGAAGACGCTTCCATTGTAATGGAAATCCTGGATTGATCCAGGGTATTTTTTACATTTAGTGTTTCAAGGAAATGTGTTTAACGTATATATATATATGTATTTTGGTGAGTGTGCTCTGCTCGACAATATTTCATTGTTTTGTGAGTTGAGTCTCTTCAAAGGAACAGTCAAACCTGTTTATAAATGTAAACATTAATCCAAAAAATAAACAGTACATGTTTCATGTTTGCAAATAGCAAGAAAAGCAGTAAGAATTTATTGATTAAAATAGTGAAATAATGCTGTAATTTCCCTGTTTAG
Seq C2 exon
TTGCTAGGTGCCTGTGTTGCAAACAGTGGAAAAATCTTTCACCTAGAAATCTGCTCACGGGAGTTTGCAAGTGAAGTTCGTGGAGTGTTGAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005318:ENSDART00000022574:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(18.5=100)
A:
NA
C2:
PF0079014=VHS=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]