DreINT0160827 @ danRer10
Intron Retention
Gene
ENSDARG00000068404 | tbcb
Description
tubulin folding cofactor B [Source:ZFIN;Acc:ZDB-GENE-030131-9296]
Coordinates
chr18:37278792-37279277:+
Coord C1 exon
chr18:37278792-37278992
Coord A exon
chr18:37278993-37279135
Coord C2 exon
chr18:37279136-37279277
Length
143 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
ACACGTCATTTGGTTTTCAGCTT
3' ss Score
7.27
Exon sequences
Seq C1 exon
GTGGGCAGAATCTTCCAGAATTTAGTGGCGTGGTCTTTGACGGAAGAGCTTTTCACGAGAAGCAGAACAATCAGAAAAATAGACGTTTTAGAGATTTGTATTTTAAATACAACCTTTGAAATAACTTATCGCGCGTAACCGATGAGATCTGAACGCGCAGACAGTTGACTGAAGCAGTGGATGAAGTGAAAGTCTTGTCAC
Seq A exon
GTGAGTGCATGTAAATACTGGTTAGCTATAGCAACCAGCAAGATATCAGATATTAAACATTCAGCGGAAGTCATGAATAAATGAGTCCGTCCGGATATCTGTGCTTTACTGCGTAAATGCCAAACACGTCATTTGGTTTTCAG
Seq C2 exon
CTTGACCAAGCAGCAGCAGAAGATGGACGGGAGTGTGACAATCATCACAAATCCCACCGTGTCCGTGCGGGTGACCAGCACCGTCAGCTCCTTCGAGGTGAACCGGAGATTCAACCGGGGAATAACGATCGCAGAGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068404:ENSDART00000078053:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF145601=Ubiquitin_2=PU(32.9=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGTGGCGTGGTCTTTGACG
R:
GGACACGGTGGGATTTGTGAT
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]