DreINT0161347 @ danRer10
Intron Retention
Gene
ENSDARG00000016835 | tcirg1a
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3a [Source:ZFIN;Acc:ZDB-GENE-090311-31]
Coordinates
chr1:44193445-44196006:-
Coord C1 exon
chr1:44195858-44196006
Coord A exon
chr1:44193541-44195857
Coord C2 exon
chr1:44193445-44193540
Length
2317 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGA
5' ss Score
3.51
3' ss Seq
CATGTGTTAATGTACTGTAGGTG
3' ss Score
8.11
Exon sequences
Seq C1 exon
AATATCTGGAGCAAGAGATCAGTCGTTCTCTCTATCCTCCTCTGAAAGGAGCTCTACCCACCGCCAGCCCAATCCCATCAGCCCCACAGCCCAGAGAGCTGCTCTGCATCGAGGAGGAGAGCGAACGACTGGCCAGAGAGCTCAGAGAG
Seq A exon
GTGTGATGCTTACAAATCATCAGTCTCTGGTGTCCTGAAGAGGAGACTCTGATGTAGTCAGAGCTGGGTAGTAATGGATTATTTGACATCCAGAATACAAAAATTAAGAGCAAACGTAAAGAATTTTTAAAAACACTTGTAATCAGACTACAGTTACTTTTTATGGATTACATATTATTTACACAATGACAGTAAGTTATTTATAAAATTGATTCTTCTAATTTTTTTTAGATTTATATTATTTTCATAATATAGCAGCTGCTTTCATAGTCATCATTTTTTGTTATTCACTTTTTTGTTGCTATTGTTTTTTTCTTTGGCAAATGCAATTCTAGTGTTTTTTTCTTATGAAATACTTGATGTAGCAGTGATTTTGCTGTATTCTCTTTTGTTTTTTAATGTTTTATTATGATATTGCTGTTTTCTACATGTACTTATATTTTAAAGTCATAAGATGTGATTTTTAATCAGTGTTACTATCAGCAAACATCAACAAAAAGGTAAATTAGTGTCAGTGTTTTACAATATTAGTATCTTTTTTCTTTGTGTCTGTCAGAATTGTACAATATTATACTTCTGTCACATCAAATTGGCGAGAAGAGTATAAACCGGAGGTCGGAGCCAGCTCCAAGTGGCTGGGACTTGATCTCCAAACCTACAAACCTGGAGTTATATATTTATTTAATATCTTGTTAATGATACGGAGTCCAATATTGTGCTTTATGAATGTCTACACCTACCCCAACCCTAAACCCAACCTCACAGTAATCTGTTGTGTTTTATTAATGTCTACTCCACCTACACCTTCTTAACCCAGCCTACTTCAAACCCTTAACAAAAATAGCCTGATTTTATCTACGTAACATTGCACGGATTACACCTTTTCTATCACGGCCTGATGCAGAAAGCCTTATCTATGCCTTTATCACATCACGTCTTGATTTCTGTAACTCATTCTTCGGTGGCCTAACAACAAGCTCTCTTAGACGTTTACAGTATATTCAAAATTCCTTTGCACGGGTTTCTTTACCCCACCATATCACCCCTGTACTTCTGCAACTTCACTGGCTTCCTATTGAGTCGCTTATTGATTTTAAGATCTTTTAAGATTTTAACATATAAAGCAGTTCATGGGCTAGCACCTGACTACATTTGTGACCTGGTAACTCTCGCCACTCCCACCTGCAGTCTTCGTTCTGCATCTGGACTTACCCTGTATCAGCTATAATGTAATCTTAAGACCATCTACGTGGTAGAGCTTTTTCAAACAGTGCACCTAAGCTATGGATGGTCTACCCATCAGCATCTGGAATGCCACTTCTCTGGACTGTTTTAAGAAACTTCTCAAGACACCTTTTTACCATTGCTTTTAACTTAGAGTGATTATTTTTGTCAATTTAATCATTCAATTTTATTGTTCATATTTTATTATCTTATTGTGGTGTTTTTACAGTTTTTTTATTGTTCTGCTTTGTTACTGCATGCCTTGTAGCGCTTTGGGTTTGAGAAAAGCGCATTATAAATAAAGTATATTATTATTATTATTACTTGTGGCATAAGTCTCTCCCACTTGGAGGTCACCCAACCTCCTTTCGGTATGATCCCTCCCACTTGGAGGTCTCCGGGCTGCATCGATACCTTCTTGAAATTGGCTCAAAAGTAATTTAAATATAATCCGAACATACTACCGTAAATGTGTAATCTAAAAGATTAAATTTGTTATATAATTTGTTATGAGTATCTTATTAAAGGTGCAGTATGTAAGAGTGACAGTTTGCAGTCCAAAGTCTAAATATTGGAGAGGTTTTTATTTATTTATTTATTTTTTTACCTGGCCCCTACTCTGACGACTGAACATAGTCATGACACAAATAAAGAGAACATACCTGATGATCAAATGTCAATTAGAATTGTAAAACTCTGAATCTGCGTCTCATTTTGGGTTGCTAGTGTCCACAAATGGTCACATTTTCGGCAGCACTCACATAGATTGAAGCAGCCTTTATGACTGAAATGAAATACTCTGCATTTACCTCCAAGGCCACCAGGGGTGCTGAAATATAACTGGGTTAAACTTGTAGTGGGCTGGTTATAGAGACCAAAACAAATACAGATATTCCGTCACAGAATGCACATTTCAAAGCAGAATATCTGACTTCAGCATTGTTTTCAGATAAACAAGAATGCTCACTTAGCACATTTCGTTAATATCTGCCAACATATTATAATGTTTCTATGCTTTATGAGAGTCGAAAACTTACATGCAGCGCCTTTAAGTGTTAAGTGATGTCCTTGACCATGTGTTAATGTACTGTAG
Seq C2 exon
GTGTCCAGGAACAGGGACAGTCTTCGTAACCAGCTGACCCAGCTCAGCCAGTACAGAGGGGTCCTGAAGCAGAGCATTTTACTACCAACCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016835:ENSDART00000145354:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(6.2=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]