DreINT0163182 @ danRer10
Intron Retention
Gene
ENSDARG00000078430 | tiam1a
Description
T-cell lymphoma invasion and metastasis 1a [Source:ZFIN;Acc:ZDB-GENE-080325-1]
Coordinates
chr10:25621138-25621485:-
Coord C1 exon
chr10:25621417-25621485
Coord A exon
chr10:25621264-25621416
Coord C2 exon
chr10:25621138-25621263
Length
153 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
ATTTTTTTCTACACTCGTAGCTG
3' ss Score
6.26
Exon sequences
Seq C1 exon
GACCTGAACATTTTAATAGAGCGCTACCTGAACCCCCTGCAGAAGGAGAGCTTCCTCACCCAGGATGAG
Seq A exon
GTCAGACACAATAATTCTCTATACTTTTATTTTAGAATTTTTAATCAAGAAATAATCTAAATGTTTATATTACATAGATTTTTTTTCTTAAATAAATAGGTGCAGGTTTAATTAATAAAAATCCACTAAGATTATTTTTTTCTACACTCGTAG
Seq C2 exon
CTGGACGTGCTGTTTGGAAACTTGGCGGAGATGGTGGAATTCCAAGTGGAGTTTCTAAAAACTCTAGAAGATGGAACCAGATTAGTTCCAGATTTAGACAAACTGGAGAGAGTCGATCAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078430:ENSDART00000143978:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0391712=GSH_synth_ATP=FE(17.2=100),PF0062115=RhoGEF=FE(12.6=100)
A:
NA
C2:
PF0391712=GSH_synth_ATP=PD(17.2=52.4),PF0062115=RhoGEF=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGAACATTTTAATAGAGCGCT
R:
TTGAACTGATCGACTCTCTCCAGT
Band lengths:
194-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]