DreINT0165354 @ danRer10
Intron Retention
Gene
ENSDARG00000098686 | tmprss2
Description
transmembrane protease, serine 2 [Source:ZFIN;Acc:ZDB-GENE-041212-48]
Coordinates
chr10:38779993-38780840:+
Coord C1 exon
chr10:38779993-38780155
Coord A exon
chr10:38780156-38780670
Coord C2 exon
chr10:38780671-38780840
Length
515 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TGAAGGAAAAACATGTGCAGGTT
3' ss Score
-1.05
Exon sequences
Seq C1 exon
ATTGTGGGCGGAGCACTGGGAACCGGATTGTGGGTGGGACCACTGTGACCTCGAAGGGGGTGTGGCCATGGCAGGTCAGCCTGCATTATTCTGGAAGGCATCTGTGCGGCGGCTCCATCATCACTCCTTACTGGATCCTTACTGCGGCGCACTGCGTTCATCA
Seq A exon
GTGAGTCTCTACACATTAGCTCGTTTTAAAGACACCAGGTTGAATGGGGTACAAAAAACAACTAATATTTATTACCATACTCACCCGGTTGATTACATTAATAATTAGCAACATTTTTTGCATGACTAGGCAAGGCAAACTTTATTTATAGAGCACAATTATACACTAAAGGGTTGTATATAATCTGGCAATATGTGTACAGTAAAAGCATGTCCTTCAGTAAAAACCTTCAGAATAAAGATATGAATTAAGTTGTGGAGAAGTGTTCTGTATATTAAAGCTGATAAAGTTGCAATTTATGGCTCAGTGCAAGAGAAAAACTGCCTTAATTTGTTTTTTAATTGAAACCTACAAACAAAAATTGATAAAGTGTGCCAAAATAAAGGATTAAAGGTATATTGATTGATACAAAACATACAATCATGTTTTGGATGTTTTGTTTTCACAAGAGGTGGGAAAAGTCTCTCCCCTAAACACACTTATGATGAGCTCTAATGAAGGAAAAACATGTGCAG
Seq C2 exon
GTTTTCAAATCCAGGGGGCTGGACGGTGTATGCTGGATATCTGACCCAATCAGAGATGGCGTCGGCCTCCGGAAACTCTGTAAACCGAATTGTCATTCATGATTTCAACCCAAACACCAATGAGAATGATATCGCACTAATGAGGCTAAACACAGCACTCACTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098686:ENSDART00000163099:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(13.5=9.1),PF0008921=Trypsin=PU(19.7=81.8)
A:
NA
C2:
PF0008921=Trypsin=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACCGGATTGTGGGTG
R:
TAGTGAGTGCTGTGTTTAGCCT
Band lengths:
310-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]