DreINT0165543 @ danRer10
Intron Retention
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27972524-27975427:-
Coord C1 exon
chr5:27975305-27975427
Coord A exon
chr5:27972668-27975304
Coord C2 exon
chr5:27972524-27972667
Length
2637 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GTCTCTGTCTCCCCCTGCAGGCA
3' ss Score
13.29
Exon sequences
Seq C1 exon
GGCTTGGAACACCGAAGGGAATACGCTTTTCTGATGTGACCGATACATCAGCTACTGTTCACTGGACTATGCCACATACCCGTGTAGACAACTACAGGGTCATCTATGTGCCCATTCAGGGTG
Seq A exon
GTAAGTAACATGTCATCTTTGTGGTTCAAAATGCAAAATGCCTTTAAAGTAGCTTGAAAAGTCCTTTGTCCTATTTTAATAGTCATAAATTCGAATGCTTCTATATAAACTTTTGCCTTTTCTGCTGTCAGACAATGTGGCCTATTAAGACAGATATGCAGTCATCTAGGTTTATAAACAAAACATTGGCTGACAAAATAACCGTATACACCAAACGAGTTGACGCCAATGGCTGTGGAAAAAAGACCTAATATTAAAGTGAATAGCAAAAAGCTTTTTGTCAATGAATAGCAAGATGCATTAGGATTTTCTAAGAAATAAATCATAAATTTGTCCCATGCACCACAAAATCTTTGTGTTAATGAAACACTATTAGTACAGTTGTTCAATACGTCTGACACTGAAATATATACTATTTTGATGAATCAAGATGAATGAAATGAATTGAAAAAAAAACACAATATTCTCCATAGAATTTTACAGACAGAAACTTTGGTTGTCAAATGAAAGTTTTACAGACAAATTTCAAGAGGAGCGCGTGATATGTTTGATCGTGGCTGATCACGACTGGCCTCTCATCCATAATCAGGAATAATCCAATCAGGGGTGTGTTTCTCAAACAATGACTCACAGCTGAACTATCATAGTACGATACATCGTTTGGGAAAAGAATGATGTAGTGACTAGTGTTTCCCAAAACCCGTAGTTTCTCTGTTGCAGATCCATCGCTTGAGCCATGTTAGTTATAATGTAAAATGCCCATTATGATGCTCTAAACAGGGTGGGTAACAACTTCTTTAGAGAAGAGCCCCAAAATTTCTTTGTGCAAATTATATTGTTTTACATGCATTTGCTTAAAAAAAAATAAAAAATCCAATATTATTTTTGGTAAAAACCAAAAATATGCACTCGCTTTCTATATTAATTGAAATATATGTAAAAGGCACATACAGTGCCTATGTTTCCTTTACAGATATTATTGAGAACATTACATATTCTAATCTCAAACATAAAATGAAAAGTTAACACATATTCTAATATCATATATAAATCTTATAAATAAATAAATAAATAAATAATGAGGCTGTTAAATTAAATTGAAATTAAATGTAATATTTATTATTCATTAGGAAATAAAAAAATACTTTACTACTTTAACCTTTAGCTACTTTAATAATAATATTAATGATGATGTTGATTAATTAGAATATTGTTGATTTATTTAAAAATTTTTGAAAAGTCTGCTTTTACAATTTGACACATCCAAACCACTGCAGAAATCTTCTAACTAACAGGCCTATGTCATATACAGTACAGATACTTATTAAATAACCTACTATAAATTAAAAGCATTAACATATGCTTTGTTTTTTTTCACAAGCTTTGGAGACTTAAAGTAAATTCTGCTATTTAATAAAAGGTCACTTATAGCTTTCGTCATGAGCTATGGCTGGGTTCAAAATGACATCACGTTTTCAAAGTGCACTGCCAAGGGTGCGCAATTGTAAACATGAAGATTACTAAAACTGAATTGTAAAAATACTTTGAAAGCAAATTACACCTAAGAGTAAAGACTTTAATGTTTTTTTAAGTTTAAATGTTAGTCTGTTCTAAATAAATAGGGAATAGAACACAGCCAGGATTTTTGCCTCTACAAGTTTGCGAATGCTTGTTGGAACGATGGATTTGGGAAACGCTAAATTAACAAACTATGTTTGTAACGAGAGAACATGCAACCTTAGTTGGCTAACGATGTTTCGTGTCTCGAGACCTACCTGATCTCAGACCCTCTTATATGCTTGTTGACCAGGCAGAGGCCTGGGCTCAATTATCTCTGAGCTCAGGGTTCTCTTCCCAGGACAGCATGCCAAACCTGCTAATAGCGTCAGGCAATTTCTAAGCGTGAACTCTTGAAACACATCATGTATTTTTATAGTACCTCAGGGAAGAAAGTGCATGAAATGTATTCAATTGTAGCAATTGCTTATCTTGGTTTCTTACTAATTATGCACTTTCCTAAAATAAAATTTTGGCTTGATTTTGTCCAGACTTTCCAGGCTTCCCTTTTCAAGTTTCTATTGTGTACCTCCAGAACACTTGAGACACACTACACATGTTGCATAGGACCATATTGTGTGTTTTTTGGCTTAATGCTAGTCTCTATTCACAATATAGATAAGTTCAAACTTGAATGAAAATTCATTCTCAGAAAGTGAGACTTGACTGTGTGGTTTTCTATGAATTTGGATGGCTGCCTCCTGGCACATCATTGATTTATTTGTACTTCCTCGGTTTATGATTTCTCATAAATTGTTTCTTATGTAATATATTGCATAAGTTGAGGCGGAAATTCTCCCAGACTGCTGTTTTGGCATCATAAATTGATCTATTCGAAAAGATGCCCCCCAAAGGTCTCATAGTGTCCTTTTGGCTTCTCTGTGATCTTTCCCGGTGTTTAGATTAGTTCCTTCTTCAGTAATGTGAAACTATCCGTCGATATCATCAATCAAACACTCTGTTTTATCCATCAGGACAGCATTCTTGTATTTCACCATTATCAATCAATTACAGAGAATGCTGCCCTCTAGTGTGTTAAGCGACGAGTAGCTGATTGCAGGTCTCTGTCTCCCCCTGCAG
Seq C2 exon
GCAGTCCTCTGACACTGAGAGTGGATGGAGGAGAGTCTCAAGCCATGCTCTCCAATCTGACCCCTGGTGTCACCTACCAGGTCACGGTCATCGCTGTTAAGGGCTTGGAGGAGAGTGAACCCGGATCTGAAAGGGTCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948:ENSDART00000131729:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.141
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.1=92.9)
A:
NA
C2:
PF0004116=fn3=PD(49.4=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]