DreINT0165559 @ danRer10
Intron Retention
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27989785-27992385:-
Coord C1 exon
chr5:27992200-27992385
Coord A exon
chr5:27989875-27992199
Coord C2 exon
chr5:27989785-27989874
Length
2325 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TCTGTTGGGCTTTTTCTTAGGCC
3' ss Score
7.21
Exon sequences
Seq C1 exon
ATCTGGATTCCCCAAAGCACCTCAAGGCAATTGAGCAGACAGATGAGAGCATAACTCTGGAGTGGAGAAACAGCAGAGCCAACGTCCTCAATTACCGTGTCAAATACGGCCCACTTTCTGGAGGGGAGCATGGAGAGCTGGTCTTCCCCAGCGGCCTGCAAGACACCACTCAGGCTAAGATCACTG
Seq A exon
GTGAGAGGCCAATCTGAATTACACAATAATCCCTCCTTTGGGATTACAAACCATGTTCAGTACAAACAGTCCATAAAGATTAAAAAAAAGGAAGGCGAAAGAGTAAAGTGAGGTTCTGCCGCAATGCGAACCAGACATTGGAGAAGTTTTCCGTTAAACCCATTTTATTTTATTACCTGAAAACGACCCTTCTGCATGTTCAAGACATTGTTTCCTCATCAAATTAGGAATGTGGTTCTCAGATTTGGCCTGAAATAATGGAAGTCTTTCTGAAAAATTATTGGAATTATTTATTGGAAACTCAGAGATTTAAACAGAGATTTAAACAGGCTAATCTAAAGGGATACTTCCCCCAAATGTTAAAATTCTGTCATCATTTAATCTCTTTTCACTTTTTCTGAAGCTTTTTACTTTCTTTTAAACACAAAAGAAGATCTTTTGAAGAAAGCTGGAAACCTGTAAAGATGTGGAAACTTTCCATGTTGGGGTGAACTATCTTTTTAAATTTGCCTGAACAGGGATAGTAAGAATTTTTTTAATGGCATCCGTGTGCTATTAAAAGAGGCTATTTAAAATATGTTTTACATATTAATAGTCTCCAGTATGTGAACTTGAAACAAAACCTTCCCCTACTTCTTAGTTTGTACATGACAGATGGTTTTCTATCTGAAAAGACTCGTTTTTTTCAAAGTAAAAAAAAAGTGATGATCCTGAGAGTCCCTGTTCCGTTGTCCCGTTCTGTGACTCATGAAATTAAATATTCTAAAATATTGTGTAGTTTAACATTTGAATTATTATATAATAAGTTATATGTATGTTGGTTGACTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATTATGAATAAATTATTTTGTTTATCAATTTATTAAATGTAAAAAAATATTAAATATTTATTACAATTTTTAACAACTGTTTTCTTATTGTCTGTAGTTTTACATTAAATTATTACTCCAGTCATTATTGCTTTTATTACTATTACCATTAATAATAATAGTAATAATAATAATAATACAGTAATTTTTGAAGGATCGTGTGACACTAAAGACTGGAGCAATGAAGCTGAAATCTCATCTTTAAAAACTAGAATAAATGATTAAATTAAATTTCAAACTACTTTTGAACAGTTATTTCATTGTGCAATAACGTTTTACAATTTTACAATTTGTACTGTATTTTTGATCAAATAAATGCAGCCTTGTTGATTAAGATAATCATATTTTAAAACATTTCAAAATCATACTGATTCCAAACTTTTGACCGGTGTGTTTGTGTGTGTGTGTATATATACCCACATTCATTTTACTTTTTTATAATAATTCTAGTGATATATATATAGGTAAAAAAAACATTGCTGACTGCAGTTCACTTAATGACCACCGGTGTCGCTAATATTAAGGTTTCTAAATATAGCAGTTATTTCCAAATGAGAGCTTTTGTTTTAATGACGTTAAACATTTACACGACTTAGTGGGAATGAGATGCTACCCTTTTTTTTAGGTAACAATGCCTCATTCATATCTTAAATGAAGTAACACTGGTGCTTCAATGTGAAAATCCCAGGAAAAGTGCTGGCTTTCTTCCTAACAGCAACACTCCTATTGTACACTTGTGCTTTGAGGCAATCTCCAGTGCTAATTCTTATTCTCTACAACCATGTGTTACCGCAAGCAGGGATTATCATGGCTGGGAGAAAAAATATATTCAAAATGGATAATAGATTCTTTGTCTGGTTTGCTCCTTTGTCCTTGGGAGGCCTGTTCGCTGTAAATAAGGCGGACGATCTGTTCAGCTAATAACGCAGAGTCTCTTTCACACACACATACACATCTCACTAGTTGTCTCTTTCACACAGTTATTATCTGTAATTGCCGTCACGCCTGTGATTTTATTGATAATGAGCTTCCTCTGCATTACGCGTAATTTCATGCTGGAGGACTCCAGCACAGTGACCTCTGCAGGAGCCAATACAGGCATTAAGAGGGGTAAAGTGTGGGATTTGGGCTAAGGGCTCTTGTGAATGGGGGTGTGGGGATTTGAGAATCTCTTGTATGATGGTAAATATTGTTTCTGGCCTGTGGAGAAGCTCTTTGATGCGGCAACCTAAAGGCATTAGATTGATATGGCGCGCAGATGAAATTAAAACCTCACAGTGGCGAGTACAAAAAATAATTGCCTTCTGTGGAGGGTCCAAAAATAACTAATGTGAGAGAATAATGGTTTCGTTTTTGCTTAATGATTTAAGAGTAAGGAATCTGTTGGGCTTTTTCTTAG
Seq C2 exon
GCCTCAGGCCTGGGACTGAATATGGAATGGGAGTGACTTCAATCAAGGAAGAGCGTGAGAGTTTGCCTGCTACGACCAACGCTGTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948:ENSDART00000131729:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=NA C2=0.839
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(72.3=95.2)
A:
NA
C2:
PF0004116=fn3=PD(26.5=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]