DreINT0166075 @ danRer10
Intron Retention
Gene
ENSDARG00000020771 | tnr
Description
tenascin R (restrictin, janusin) [Source:ZFIN;Acc:ZDB-GENE-030804-1]
Coordinates
chr2:35471954-35475356:+
Coord C1 exon
chr2:35471954-35472105
Coord A exon
chr2:35472106-35475259
Coord C2 exon
chr2:35475260-35475356
Length
3154 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
CTCTGCTGACTGTCTTTCAGGTG
3' ss Score
11.01
Exon sequences
Seq C1 exon
GAAACCGATTGTTTCCAACGCCACAGAACTGCGCGCAACACCTCCTAAACGGCGAGACTCTAGGTGGGATCTACACTATCTACGTCAACCGAGACCTCAGTCAAGGCGTGCAGGTTTACTGTGACATGACCACTGATGGAGGCGGCTGGATA
Seq A exon
GTGAGTGAGAGATCTGAACCTGTCTGTTTTGTGCTGAACATCTGGCATGATATACACAAAATAGCTTGTTATAGAGCTGCCCGTTGTGCAAATCAGCAGTTTAGACCAATTTTCAAACTGGTTAGAAAAACTAAAGCTCATTGAAATTACTATTTTGCATATTTTTAGTGCATGACATGTATTAATAATTGTATTGATTTGAATAGTAATATTATTGATTAGAGTATATTAATACTATTGATTATATACACTGCATGACAAAAGTCTTGTCTCAGTTGTAAGAGCAACAAATAATAAATTGACTTCTTGTTGATCATTTGGAAAAGTGGCAGAAGGTAGATTTTTCTGATGAATCATCTGTTGAACTGCATCCCAATCATCACAAATACTTAAGAAGACCTACTGGAATCCTTATGGACCCAAGATTCTCACAAAAATCCGTCAAGTTTGGTAAAGGAAAAATCATGCTTTACAATCCACAGGAGAGGGCAAAGTCTTTAGCAGGATAGCACTCCTTCCCATACTTAAGCCTCCACATCAAGTTCCTGAAAGCAAAAAAGATTAAGGTGCTTCATGTTTGGCCAGCCCAGTTACCAGTAATGAACATTATTGAGCATGTCTGGAGTAAGATGGAGAAGACATTGAAAATGAATCCAAAAAATCTTGATGAACACTGTTAGTCCTGCAAGAACGCTTCCTTTGCCATTTCAGATGACTTTATTAATGAGTTATTTGAGTTATTGCAGAGATGTATGGATGCAGTCGTCCAAGCTCATGGAAGTCATACACAATATTAATTCTTTTTCCACTGCACCATGACTTTAGATTCTATACTGTACATTACTTCTATTGAGTGACAAGACTTGTGTCAAAGCAAAGTCAGACCTTACTCTTCTAATTAAATAACAAAAAAATGAATTAATTTTGGTGAAAAAAGTGTCATCTAGAGGCATTTGCCTTTCATATTAGCCACCTCTGATAACAAGTCATCAACTAAAAGTTATTATTCGTTGTTCCTAAAACTTCTAAAGGAGACAAGACTTTTTTTTGGCAGTGTACTGTTAATATCAGTTAACTGCATTCATTTAAATATATGTATTACATTTTGATTCTATTACTTATTTCTGTATCCTATACAAATTCATATTATTATTTAATGTTTATACACATTCATTATATCATTCATATGAATCTGATATTAATTGTGTTATTTATCAGCTGTTAATTTATATTAATTGCATATGCTATTAGGAGTTAATAATATGTATTGATATATATATATTTTTTTTTTTTTTTTATTTATGCACTTATTTTTGTTATTTAGACAAGGGGTTTGGAGAAATGTTTTTTTTTTTTGCCATTTTTTTTCCGTAGAGTTTTTTTTTTTTTACACCGGACAAACGGCACTTACATCAGCGAAGGTCAGACTATTGATTTTACAATTAACCTTGAACCATATTGTCTGTCCTAATAAAGTTATCATCCAATTGGCAAATACATATAATTGCCTTTAGCACTTACCAAGTGTACGTTTTAGGTCCTGCCGTCTTTCTCCACCCAGAGACCAATATTCAGAACACAACATATGCTGGAGATTGTCCATTCTGCTCTTTACAGCTGGTCTTTACTGGTCATGACCACCAACACAGCTGCCTTTATTGCAAATTCCATCAATAAAATGACACTGCTGGGATACATTGTCATTCATTTGCTCCATATTGCCCAAAAACACAATGGGCCTTATTCAAAAACACAATCAGAACATTTTTTTGTGTAATTCTGATAGACATTTTCAGATATTTCTGAAATTTCTGATATTATCATATTTTCCAAATGTTAGTTGGCATGGATGAAATGTACATTAGCTTCCTACCATGCGTAAATGTGGTGTAAAACCTCTGTGTTCTTCTTGGCAAACTCAATACACTTAATTTTGGTGCAATGGCTTGTCACCCAGCCGTTCAGTAAATTGGGGAGGCATGGGACAAATATGCCAATCAATCATCATACTGTATTTGTACAACAACTAAACAACAAAGAAGAAGTCAATTTTACTGACTACTTCATTTTCATCTTCAAAAATATTCTTCAAAATAAGATGCTAAGAAAAAATTACTGGTGCAGATTGAATTGTAGCAACTATATTGTCAGCTGGATGTGCTGCCAGAATATTCTCAGGCGATATACAGCTGGCCATTTTGGAACAAGGGCTTGACATTTTAAAGCTGGTTTAAAATGGTTTGGTGCAGGGCTGCAGGATATTGGAAAAAAAATTAAATTGCGATATTTTTTTATTTTGCGATATATATTGTGATATGAATACAATTTCACCAGATGACATAATATCTCTATTTGAAAAGATTTTATAATGTTAGATGTATTGGGATGATTCTGCAGTGAGAATGCATCTCCATAAAATCTAATAAACAATTTATTAATTTTTGGGGTCCTCCAACACATTTTTGTTGTGCCCTGTGCTATCTGCAGTGCATTTCTGTATTTGCACATGTTGTGAGTATTTTTATGCACAACAATCTATAAATACAATCAAGAAAAAGATACAAAAACATATTTTGTCGTCTAACAGTATTGACATGTAGTATCTGAATAATAAAAATACAAATTATTCAATAAAATTAATTGTAGTTGAGGTCAAAATGGTACAATTTCTTATACCTGAATGCCTTTAAAATCATTATACAATCACAAGCATCAAAAACACATGCAAATGATGAATTATAATGCAAACTCAACATTGCATATATCCTGCGATGTGACTATTGCGAATGATCGATGCCGAAACCATATATTGTGCAGTCATAGTTTTGTGGACTTTGGTGGTTTATACAATATTTATGTTTATTCAAGTCTTTTGTGCATTTTATGTTTCTGGAAGTAACTTGCATGAGTATAATTTATTAGGGATTATGCTAATGGTGAAAGAGAGTGTTCTCGCATCCTATTTCCGAATTACTGGAATTCATTAACATACATACATATTTAAAATCTGATGTTTACAATGCAATCCAGAGAACAGTTTTTGTGAAGGCCTGTGTTTTGCGTATTTCACTAAATTTACTATTTTATTTACAAAATCTTTCCTGAATGACGCAGCTCAGTGCGGCAGCTGAAACCTCTGCTGACTGTCTTTCAG
Seq C2 exon
GTGTTTCAGAGACGTCAAAACGGTTTGACGGATTTCTCCAGAAAGTGGACTGACTACAAGATCGGCTTCGGCAACCTGGAGGACGAATTCTGGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020771:ENSDART00000015827:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(21.0=86.3)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]