DreINT0167091 @ danRer10
Intron Retention
Gene
ENSDARG00000002168 | tra2b
Description
transformer 2 beta homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1094]
Coordinates
chr9:12610980-12613519:-
Coord C1 exon
chr9:12613331-12613519
Coord A exon
chr9:12611096-12613330
Coord C2 exon
chr9:12610980-12611095
Length
2235 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAT
5' ss Score
2.99
3' ss Seq
CTGGCTTGTTTTGGTTCTAGGCT
3' ss Score
8.3
Exon sequences
Seq C1 exon
GCAAATCCAGACCCAAACTGCTGCCTGGGAGTGTTCGGATTGAGCCTGTACACCACAGAGAGAGACCTGAGGGAGGTCTTCTCTAAATATGGCCCTCTGAGTGATGTGTGCATTGTGTACGACCAGCAGTCACGGCGCTCCAGGGGTTTTGCTTTTGTCTACTTTGAGAACAGAGAAGATTCAAAAGAG
Seq A exon
GTGCATTTTCCACTTGAAAAAATGACAAAACGATGACATGATTGCATAATGACAATTTGGCTACAGAATTTGTGTTTAAAAGGGTGGTTCTTTTGAAAATGAAATTTTGCAGATAATTTAGGATGCTTCCTAGAGTTCAATTTGATGTGGTTTGTTTTGGCAGGTGTGAATGCAGCAATTGCGCTCTAGAGCCCACTAAAACGAGAGCAAACAAGCGTACTGAGATCTGGTGGTCTCCACGCTTTCAAACAAACACTGGAGTAGTTTGTTTGTGGTGATACCATTAGCTTAAATAGATGCAACTTTAAAGTACTGTGCATTTTTGGACTAAACTAGCCTCCGTAGGTAGCTGCGATGTATTATGGAGTGAGGCCAAGTATTTGTTTACAGTGCATTAGCAACAGCTAAATTGTAGCTTGCGGGTACATTTTTTTAAGTGACTGCTGATACGCCTTTAGCAATTTGCTCTATATTAATACATTTTGAAGCTGCACCCGCACTTAATTTTTGAAATTTTATGGTTTGTATGAAGTTAATAAAATTATATTAGGGAAGCCCTAAATTTTTGGCTGCTGAAAATTATCAACAGAAAATTGGCCAAAAATATGACCCAAAAACAGAGTTATTAGGCTGTGCTGTGCGTGAGCTGGTTTTACTTTCCTTTTCAGCTGTAGACACTGCATACCGGAAGCAGGAAGCACTGCTCTATATAACAAATCTATATAACTTTGGCTTGTGTTTTTTGAAATGGGTATAATCAACGTTGGTGTTTCTTAACTATGTTTCTTGAATCATTTCCTATGTCTCCTTAACCAAACACGCCTGATTCGCATCATCAGCTCATTGGCAGAGACTGAAAGACCTTGCATCATCCCCATTTGCATGCCATGCATCATAAAAAGTATTTGAAAATAGAATTTCTTCCAACAATTATGTCCCAAACTGTAGCATGTTGAAAAGAGTATGCCGAAGGTTCCTGAATTGTCTGCAAATTTCTGTAGAAATTAGAAGTGTAGAATCGTCCATACTCTATCTACTAATATTGCCCACAAAACTTTGCACATTGGATGTAAATTCGTTTAGAACTAAACATTTGGGGAAACTTGTGTTTGTGTGTGAACAAACTACAAAAATGGTGGACATGGACACATGAAATCAACTGTCAAGTAGAGCCACTTTGGTAAAATTGTTTAAATGACTGTCAATATCTAGCCCACTGGAAAATATTTAAATCACAATTTCTGTGTTATATTTAATCTGCAACAAAATGAACCTCTAAAGAAACGTATTTGAAAATAAACTTCAGAATGTATAATAATCCAAAGACCTCAGGAGATTCATCTGCGTGAATAACTCATGGCAGCAGGTTAGTCTGCTATTAGAATCTCCAATAAGATAGGAAATTTAATATGAAAGGAATGTGGATGATATGTGTAGATGATTGACGGGATGTAGCCAAGCAACATAATGGTCCGTTAATAAGAAAGTAGTATGTCCCAAAGTTTGCATACTTTGTTAAAGTATGTACTTTTTCTTCACATAAAAAGTACATACTTTTAGAACATAGTACAAGTTTGCAATTTGAAAATAATTTTCCTCTAGAAACGTGGCAAAGAAACGCTGATCCTAGTTGAGTTAAATTGAAAAAGGCTTACAAAATAATTATTTATTATTTTAATATTATTCATTTTGTGGCCAAGTGCATTTTGTGAAAGCACTCTGGATTACTAGCTAAGGCAGTTGATTGGAGGAATGTGTTCATTTTTTTCACGGACTCTTTGATTCATTGATTTAGCCAACAACCATAGTTTCAACTAAAATTCTTAAAGCTTCTACTGAAGATTCACCTTCATCTTTAATGGCAAGTAAATTAACAAGTTACATTTCACAGTGAGCTATACGTGTAATAAAATGTCTGCTGTCATGTGAATGGATTTGCCTAAATTGAAAGGCTGCTTTGTTTATAAACTATATTCTGCTCTTCTATTCTATCTTCTGAAATACTTTAGAAAGTGAAACAGGAGTTTTGTACGTGTCTGTATTGGTCATACTTTGACATGCTTTTTTTGTGAGCAGTGAGGTTGCATTATGTATTTTATCGAAGTACAGTACAGAACATACTGTTCCTGCAGCTCTTTTATGGCCTGCCATAAAGCCATACCTGGAGTTAATGTTCTTTTGGATGCTATTGTGTGCTCAGTCAGTGTGGCTTATTCTGGCTTGTTTTGGTTCTAG
Seq C2 exon
GCTAAAGAGCGTGCAAATGGTATGGAGCTTGATGGCCGAAGAATCAGGGTAGACTACTCCATTACCAAGAGGCCACACACACCTACTCCTGGAATATATATGGGCAGACCAACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002168:ENSDART00000021266:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.923
Domain overlap (PFAM):
C1:
PF044847=DUF566=FE(32.6=100),PF0007617=RRM_1=PU(76.1=85.7)
A:
NA
C2:
PF044847=DUF566=PD(5.3=25.6),PF0007617=RRM_1=PD(21.1=38.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]