DreINT0167188 @ danRer10
Intron Retention
Gene
ENSDARG00000017240 | traf5
Description
Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]
Coordinates
chr22:38357810-38360010:+
Coord C1 exon
chr22:38357810-38357884
Coord A exon
chr22:38357885-38359917
Coord C2 exon
chr22:38359918-38360010
Length
2033 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTACTCTGTTTTTCTTGCAGGAT
3' ss Score
13.17
Exon sequences
Seq C1 exon
CTGCAAGCACATGCTGACGAGTGTCTCGAAGTGGAGACCGACTGCGTTTATAAAAACTACGGCTGCACAGTCAGG
Seq A exon
GTAAGACTACAACATTTCAGCATTTGAAAGTGTCGGTGATGTCTTGTTTAATGACAGGGCTGTTGAAGAAACTGCTGTAAGGGCTTAACATGAAAAAGCTTAGAGACATGCCAGCAAACAGTTTAGTGTTTGATAGATGTCTAATAGACATCTAAACGCTGACAGCTTGACTAAAACAAGGCTAAACTTAAGCTGTTAGTGAAAATCTAATAGACATCTAGCCCAAAACTAGACCAGTCGTCAAGATTAGACTGACTTTACATGTGTAGTCACTCATTTCTGTTTATTTGATGGCTAGTCTAGTTTTGGGCTATTTTTAGACGTCCCATCTTTAGTCTTGTTTTAGCCAAGATGACTATGTTTAGATGTCTATTAGACATCTTTAAAAAAACAAGAAATGCTTGCTTAGAGACAAGCCAGAGACATGTTTATAAGAGTTATGCCCTAATTAAATGAGTCCTAGTTTAATATAAGCTCTGAAACTTGCCTCGGCTCGGTCAGTTGGAGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCATTCTCGTGGGTTTTCCTCAGGGTGCTCTGCTTTCCCCCACAGTCTAAAGACATCTGGTACAGGTGAATTGGGTAGGCTAAGATGTCTATAGTGTATGAGTGTGTGTGAATGTGTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCCACTGGGTAAAAACCTGCTGGATAAGTTGGCGGTTCATTCCCCGGTGGCAACCCTAGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATAAATGAATGAGGAAAAACTCTTAATTTTGCATTATTTCTACTGAAGGTGAAAATAATTCAATATTTTTACTTGTTCTAAGAATTTTTCAATATTTGGACTAGAAACGAGACAATGCAAAGTAGGAAAAGCATTTTTTGTATTGTATTTATTGTACCTGAATCATGTTAGAAAACCAACAGTATCTGGAGCAGCCTTCATGATGCATGCTGAGGGCTATATTTTAAACCTTTGGACGCAAAGTCTTTACTCTTAGCTGGTCTATTGCAATCTATTTTAGTTCCTCAAATTAGCAACGCACCAACTATATGTGCCTTAACACACCTTCTTTCTAGATCAGCACACCCATGAGATCACAAAATGGCGCAAATGGATTTGCTGTTTAAACAACATGGCGGAAGACGGATAATCAAGGTTGCATTGGTCTAAAAATAGCAGAATGTTGGGGAAAACACGTCTTATTGCGCCGGGTGCATGATATGCCAGACACAATGAACTCAATGGAGCTAGTGATGTCACTGTGAAGGGTTAGGTTAGGGGTGGAGTCCATTCAAAAGCATTGCACGCAGCTTAGATTGCATCTGCACCAGGTCTGCATCCAGACCTCTGTCCAGAAAACTGCCAAATAGAGCTATTCCTCTAGTGAAACTGCAAAAATATCACAATATTTAATCGCAGAAAAATAAAACATCGTAATATCAGACTGGGCGACGCAGTGGCGCAGTAGGTAGTGCTGTCGCCTCACAGTAAGAAGGTCACTGGTTCATACCTCGGCTCAGTTGGCTTTTCTGTTGTGGAGTTTGCATGTTCTCCCTGCGTTCGCGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAACACATGTGGTACAGGTGAATTGTGTAGGCTTAATTGTCCGTAGTGTATGTGTGTGTGTGTGAATGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCTGCTGGAAGGGCATCCGCTGCGTAAAAACTTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCGGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGAATGTAATATCAGACTTTTCTAATATCGTGCAGCCCTTGTACAAACATTTTTTTTTTTAAATGTAAAGATTAAAAACTTTCAGGGATGTGAGATGCTGATGAATGCATAATAACCGCCTGACACTGCCAAAACAGCACATGTTCAGACTCACATCTTTACTCTGTTTTTCTTGCAG
Seq C2 exon
GATAAAAGGGGAAAAGTGCAGGTGCATGAAAACACAGAGTTCAGTGCACATGTCCGACTCGTCCTTGAAAGTAACACCAAACTGGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017240:ENSDART00000137339:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=FE(40.7=100)
A:
NA
C2:
PF0217613=zf-TRAF=PD(13.6=25.8),PF057016=WEMBL=PU(18.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]