DreINT0169321 @ danRer10
Intron Retention
Gene
ENSDARG00000091967 | ttf1
Description
transcription termination factor, RNA polymerase I [Source:ZFIN;Acc:ZDB-GENE-030131-6913]
Coordinates
chr5:62666251-62667092:+
Coord C1 exon
chr5:62666251-62666294
Coord A exon
chr5:62666295-62666380
Coord C2 exon
chr5:62666381-62667092
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TGATGTGCTTCTGTTATCAGTTC
3' ss Score
7.85
Exon sequences
Seq C1 exon
GAGCGAAAGTACAGTTTTAGTAAACGTTTCTCTTAACTTTTCAG
Seq A exon
GTACAAAATTATATTTCTGCTCACGTAAGTTCATATGTGTCGCTAAACATATATTCGTAATGTTTTTGATGTGCTTCTGTTATCAG
Seq C2 exon
TTCGTGCGCAGGAGGTGAAGTTAGCGACACACGTGCGAGGGGTCATGGTTTTTAGCGTGTAAAGATCTTTAATTTACGATGGATGAGATGCTGTCAGATTCACCTAATAACGTTGATGGGGAAAAGGTGAAGAAAAAGAGAAGTAAAACTACAGAGCAGCATGAGCTCACTGAGAGTCCACAGGAACAGACTGAGAAACGCCGCAAAAAGAAGAAGAAGAGGAGAAACAGTACAACTGAATCTAAGGATAATCTGCAAACAGACACAGGCAAAAAGAAAAGGAGAAAGCTGGATAATGAAGGCGAGACTTCAGTGATGGATGATGGAGTCTCAGATCAGCATGAAGCACAAACACAAGAGCTCCCGGGTTCAAGTGAAGAGAAGACTTCTAGGAGATTGAGAACGAGAAAAACTGCGACACAGACAAGCTATGCAGAGATGACAGAAGAAGAACAGACTGACACTGACACCGAGACAGAGCATGAGCATGAGGAAGCGCCAAACACGAGTGACGAGGAAAGCGACCCGCTTGATGCGGTAACCGGTGACGTTACTAGAACGCGCAAAACTCGTAAGATTCCAGTAGATTTGAAGCTCCTGGCTGAACTGAAAGAGTTTTGCCCAAATACGGCGATAGAATCCAGATGCGATAATGATATAAATAAAATGATCAGGTATGACCTGGCAAGATTCAGGGAATTCAAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091967:ENSDART00000142862:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.764
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAAAGTACAGTTTTAGTAAACGT
R:
TCACCTTTTCCCCATCAACGT
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]