DreINT0173904 @ danRer10
Intron Retention
Gene
ENSDARG00000079782 | vmhcl
Description
ventricular myosin heavy chain-like [Source:ZFIN;Acc:ZDB-GENE-061027-393]
Coordinates
chr2:24633814-24633990:-
Coord C1 exon
chr2:24633949-24633990
Coord A exon
chr2:24633870-24633948
Coord C2 exon
chr2:24633814-24633869
Length
79 bp
Sequences
Splice sites
5' ss Seq
CTTGTGGGC
5' ss Score
-2.64
3' ss Seq
GTATATTCTTCTCTTTTAAGTTT
3' ss Score
8
Exon sequences
Seq C1 exon
AATCTCGGCAAACTTTTCTTTGCTCCCAGTGTTCCTTTTCTT
Seq A exon
GTGGGCGTTTTCCTAAAACTTAATTTCTGCTATTGTTTATACATGCATATGTTTTATGGGTATATTCTTCTCTTTTAAG
Seq C2 exon
TTTTAGGTGAAATCGCAAAAACCTGGAGCTTCCTTCTGCTGTGATTAATCGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079782:ENSDART00000128784:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCAAACTTTTCTTTGCTCC
R:
CAAAGCGATTAATCACAGCAGAAGG
Band lengths:
95-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]