DreINT0175243 @ danRer10
Intron Retention
Gene
ENSDARG00000044801 | wdr38
Description
WD repeat domain 38 [Source:ZFIN;Acc:ZDB-GENE-050417-160]
Coordinates
chr21:5756594-5759031:+
Coord C1 exon
chr21:5756594-5756714
Coord A exon
chr21:5756715-5758914
Coord C2 exon
chr21:5758915-5759031
Length
2200 bp
Sequences
Splice sites
5' ss Seq
CGGGTATAG
5' ss Score
4.4
3' ss Seq
GTTTGTCTGTTGTTCTGCAGGTC
3' ss Score
11.28
Exon sequences
Seq C1 exon
GTGAACTGCTGCGCTTTCTCTCCTGACTGTCAGCTTCTGCTCACCTGTTGTGATGCCGGCAAACTCTACCTATGGAAAACTAGCACCGCCAAACTCCTGGCCTCAGTCAGCGGACACACGG
Seq A exon
GTATAGAACTATCAGCCATTTAGCACAGGACTATCAGCCATTTAGCACAGGACTATCAGCCATTTAGGGCGGGTCTATTAGTCATTAAGAGCGGGTCTATCAGCCATTTAGGGCAGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGTGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATTAGCCATTAAGAGCGGGTCTATCAGCCATTTAGGGCGGGTCTATTAGCCATTAAGAGCGGGTCTATCAGCCATTTAGTGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATTAGCCATTAAGAGCGGGTCTATCAGCCATTTAGGGCGGGTCTATTAGCCATTAAGAGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTAACAGCCATTAAGAGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGTCATTTAGAGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTAAGAGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGTCATTTAGAGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGAGCGGGTCTATCAGCCATTCAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTAAGAGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTAAGAGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGAGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTAAGAGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTCTATTAGCCATTTAGGGCGGGTCTATCAGCCATTTAAGGGCGGGTCTATCAGTCATTTAGAGCGGGCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTCAGGACGGGTCTATCAGCAATTTAGGGCGGGTCTATTAGTCATTAAGAGCGGGTCTATCAGCCATTTAGGGCAGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGACTATCAGCCATATAGGGCGGGTCTATCAGTATTTAGGGCGGGACTAACAGCCATTTAGGGCGGGACTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGTCTAACAGGCATTTAGGGCAGGACTATCAGCCATTTAGGGCGGATCTGTCAGCCATTTAGGGTGGGGCTATTGGGCATTCAGCACAGGACTATCAGCCATTTAACACAGGACTATCAGCCATTTAGCACAGGACTATCAGCCATTTGGGGCAGGTCTATCAGCCATTTAGGGAAGGTCTATTAGTCATTTAGGGTGGGACTATCAGCCATTTAGGGCGGGTCTATCAGCCATTTAGGGCGGGACTATCGGCCATGTAGCACAGGACTATCATCCATTTAGGGCAGGTCTATCAGTATATAGAGCGGGACTTTCAGCTATTTAGGGCGCTACTATCAGGCATTTAGGGCAGGACTATCAGCCATGTAGCAGAGGACTATCAGCCATTTAGCACAGGACTATCAGCCATTTAGGATGGGACTATCAGCCATGTAGGGCAGGACTATCAGCCAATTAGGGCGGGTCTGTCAGGCATTTAGGGCAGGACTATCAGCCATTTAGGGCGGGACTATCAGCCATTTAGGGTGGGGCTATCGGCCAGATGTTTGAGACAGGGCCATCATTTTAGGCAAGTACTAAAAGTAGGCAATTTATCTTTATCTTTCGTTTGTCTGTTGTTCTGCAG
Seq C2 exon
GTCCAGTGAAGTGCTGTGTTTTTTCCAGTGACGGTCGGCTGTTTGCGAGCGCGTCTCATGACTGCAGCGTCCGAATCTGGTGCAGCTCCAGCCTCAAATGCACACACACACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044801:ENSDART00000065848:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(65.8=61.0),PF0040027=WD40=PU(28.2=26.8)
A:
NA
C2:
PF0040027=WD40=PD(69.2=67.5),PF0040027=WD40=PU(20.5=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]