DreINT0176216 @ danRer10
Intron Retention
Gene
ENSDARG00000101030 | wu:fd58b11
Description
wu:fd58b11 [Source:ZFIN;Acc:ZDB-GENE-030131-4747]
Coordinates
chr4:74784805-74787827:-
Coord C1 exon
chr4:74787552-74787827
Coord A exon
chr4:74785084-74787551
Coord C2 exon
chr4:74784805-74785083
Length
2468 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGTGGTGTTTGTTGGTTCAGTGA
3' ss Score
6.2
Exon sequences
Seq C1 exon
CAGATGGATATTATTTCTCCACGTGGTCACAGTGCATCTACAGCTATCCTGATTTGAGTGACATGGTGTTCATTCTCAGCTTTAACTTCAATAAATGGATGTTTCTTCAGTTCAACAGCACTGTGGGGATTTTTGTAGGTTATACTGAGCAAGGAGTTAAATTTGCAGAGAACTTTAACAAAAATGAAGCCTATTTACAGCAGTTGAGAGCTGAAGTTGATATATTCTGCAGACATAATGCTGAAATATACGAATCAGCGGTCTTTGATAAAGCAG
Seq A exon
GTGTGTGGGACAACACTCAGATCTATTGATTTAAACATTTATGATCAAGAGAAATGACGGCTGAAATAATACATTTTGGTAACACTTTACCTCAAGACGGTGTTCATAAGACTGTTATAACACATTTATAACTGTCATGAATATAAATGAGATTGTATACATGCTTATAGTATACAGTCACCAAGTGTCATTCGCTCAGTTCTGTCATTTATAATGGAAAGATGACGTTGTTTGAGTTGTCTTTGTTATGACATTATCAAGGCAACATAAGTTGTCATAAATCTGTCATAAACATGATTGTCATCATGAGGCCATTACAATGGTATCAATAATATTTTACTTTTTTTCAGTGGAACAACCTGAGTTTGTGGTTAAAATATTTTAGTCAAATGTCAGTATTCTGTCAAATATAACGTCTATAGTTTATTATTTTATAGTTTAAGACAGTTTATAACGTCTTCATTAAAATGACGTGATGACGAATTCAATTTGAAGCACTGCAGTTGAGGTCAATTAAAACGATAAAATTCATGACACAGTTATAATGGCCTCATTATGTTTATAAAAAGATTCGTGACAGTTTGTTTAATAATAATTTTTTACATTTATATAGCGCTTTTCTGGACACTCAAAGCTTTTTACACATTTTCAGGGGAATCTCCTCATTCACTACCAGTGTGGGGATGGATGACACCACAGCACACCACACACTAGCTGATAATAATAATGCCTAATAATCACCAGTCTATTATAATCAATGGCGATCGGAAACAATAGTACCCCATTCGCTTGTTGCTTATGATCGCCATATTTGTGAAATAGTATACACTATTGTTTATTACGCTATTGATTAACAATATAAAAAAATATTGATGACGATGACATTAACATTCGTTGTAACCATATATAGTTTGCCTAGATCGTGTGTGCCTGAAATGTGTGTGGTTCTACGGACCTGCAGCTGGATGTTATTGCAGGTTGTCATAACAAAGACAGGATTCCCACTGTGAGCCCAATTCCCTGCCTAAAAAGCTGAATTATCCATGTTGTACTGTATAATAAGCACCGGGCAGACAAAGCGGAGAATATATTTGTAATCGCATGTCTTCATGTCGTATCTGTTTAGGACACAGTGATAAAGTTGTTTGAAGGCAATTGATATTCTTCTCAATTAGCCTATAATTTAAATAATGATTTGTCAACCCAAGTCAAAGACTTTAATAATAATAAATGACTAAATATCATTTGTAGAGGAAAAAACAACAACAATTCTCACAACCTAATTAGTTAAATTTTAAATAAAGTTATTGAAAGTACAATTAAAAATAACAACAAAAAAAGAAAAACTGATAATCCAAGTCTTGAACGCACTAAAAAATGCTGGGTCCTGCTGTAAATCAGACTAAACTGCTGGGTCAGTGTCATCTTTGCATTTAAATTGACGACTGAGAGAATAACAGTTATTGACTGTTGTCACAAGCATGCATGAAATGTCCTTTACATTTATAACAACAGCAAATCGAGAAAAAGTTGGGACAGTATGGAAGACGCAAATAAAAAAAGAATTGATTTCTAAATTACGTTGACTTGTATTTCATAGCAGACAATACGACAGACATTATTTAATGTGTTCCTTGTGATTTTTATTTTCAAAATAAACATGTATCCCAATTTTGGTTCATGCAACACATTTCAAAAAAGTTGGAAGAGTAATGTATTTACCACTATGTGATGGTCCATCCAAGATGCCTCCGAACCCAGAGATATCGACGATGATTCTGGACACTGTTAACATAGGGCTTCCTTTGGGCACACTACAGTTTTCACTGGCATTGGTGGATGTAACTAAAAGGTTTACCGCAGTAACCCTGAGCCCGTGTGGTGATATGGGTTATCGATGAATGAGGATTCCCGATGCAGCGCCGCCTGGGGAATCACGAGATCACGGTTGTTCAGCTTAGGCTTGCGCTCTTGTCCATTAAGCACTGAAATTTCACCAGATTCTTTAAATCTTTTAATTAGCTTATGCATTGCTAAAGGTGAAATATCCAAATGTCTGCCTCTCTTTCTCTGAGGAACATTGTTTTTCATCATTTCAGTAATTTCCCAACATGTTTATAGGTAAACTGGAGATCCTCGACCCATCTTTGCTCCTTAAGGACCAGACCTTTTATGGATGCTGCTTTTATACCAAATGATAATGACAATCACCTGTTGACATCACCTGTTTCACATCACATCATCATTCACCAGTTGACCCGGTTACTGCCCTAAACTGCTCCTGTCACAGCTGTTTTGGAATGTGTTGCTAGTCTGAACGACAGGAAAGTTTTTCATACTGTCCCAAGGTTTTCTGATTTAGGATTGTATGCCACATCATGATTATAAAGAAGTCTCATGAACACCAATGTAAAGCGTTATCATAATAATGTTTGCTCAGATGTTGACTGTGGTGTTTGTTGGTTCAG
Seq C2 exon
TGATGCCGAAGGTGAACCTGAGTTTGGTGCAGAAGGGCGATAGCAGACACCCGTATCTGCTGAGGTGCAGTGCCTATGACTTCTACCCTCAGCAAATCAAAATGTCCTGGCTGAGAGATGGAAGAGTGGTGTCAGACGTGACCTCCAGCGAGCAGATGCCCAATGGAGACTGGTACTACCAGAGTCACTCTGAGCTGGTGTTCAGCCCCAAATCTGGAGAGACCATCTCCTGTATGGTGGAGCACTCCAGCTTGACCGGACCTGTAGTCATTGACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101030:ENSDART00000168831:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0096914=MHC_II_beta=WD(100=81.7),PF0177315=Nucleos_tra2_N=WD(100=43.0)
A:
NA
C2:
PF0765410=C1-set=WD(100=87.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]