DreINT0176217 @ danRer10
Intron Retention
Gene
ENSDARG00000101030 | wu:fd58b11
Description
wu:fd58b11 [Source:ZFIN;Acc:ZDB-GENE-030131-4747]
Coordinates
chr4:74784499-74785083:-
Coord C1 exon
chr4:74784805-74785083
Coord A exon
chr4:74784619-74784804
Coord C2 exon
chr4:74784499-74784618
Length
186 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
GTGCCATGTGTCCCCCACAGAGC
3' ss Score
10.14
Exon sequences
Seq C1 exon
TGATGCCGAAGGTGAACCTGAGTTTGGTGCAGAAGGGCGATAGCAGACACCCGTATCTGCTGAGGTGCAGTGCCTATGACTTCTACCCTCAGCAAATCAAAATGTCCTGGCTGAGAGATGGAAGAGTGGTGTCAGACGTGACCTCCAGCGAGCAGATGCCCAATGGAGACTGGTACTACCAGAGTCACTCTGAGCTGGTGTTCAGCCCCAAATCTGGAGAGACCATCTCCTGTATGGTGGAGCACTCCAGCTTGACCGGACCTGTAGTCATTGACTGGA
Seq A exon
GTGAGTCACAACACTTTGACATTCAACTCATTGCTAAATTGGCGAATTATTTTGTATTACACCAAAATCCAAGGTTAAACATTAAAGTTGATGTTGGTGTGGGGTGGTCCCCTGTATCCTCTCTTTGCTCAGACGCCCCTGTTTACAGTGAATACAGTGATAATGAGTGCCATGTGTCCCCCACAG
Seq C2 exon
AGCCCCCTGTCCATGAGTTTGAGTGGGATTTTCAGCTGTTATCTGCTGCCGGAGATGCCTCCGCGGTGCTGGGAATCATCATTGCCACCGCTGGATACATTTACTACAAGACTAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101030:ENSDART00000168831:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAGTGGTGTCAGACGT
R:
CGGTGGCAATGATGATTCCCA
Band lengths:
251-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]