DreINT0179129 @ danRer10
Intron Retention
Gene
ENSDARG00000104436 | zgc:153426
Description
zgc:153426 [Source:ZFIN;Acc:ZDB-GENE-060929-220]
Coordinates
chr3:45413848-45418846:-
Coord C1 exon
chr3:45418736-45418846
Coord A exon
chr3:45415239-45418735
Coord C2 exon
chr3:45413848-45415238
Length
3497 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
TCGTATTTTAATGATTGCAGGTC
3' ss Score
6.32
Exon sequences
Seq C1 exon
GTGGGAAGTATGTCCCCCGTGCCATCTTGGTGGATCTGGAGCCTGGCACAATGGATTCAGTTCGTTCTGGACCCTTTGGCCAAATTTTCAGACCTGACAACTTTGTGTTTG
Seq A exon
GTGAGCTAATCTTTTATTAATTACTTTTTTCATCATTACTTTTGTTATAAACAAATATGACACCCACAGCATTGTTAGCAAAGGTCAGCAAGTGAAGTGCAGTTAAACCTCACTCCTCTGATATCTAAAGGCGATTGATCTAGCGACAGACGCTAGAAGCCATGGTCTTTAACCTCCTTATTAGAGCAACCGACTCCCATACGGAAAGTCGCCAGTTTGATCCCAGCTCAGAGCGGGTTGGGTGGTGTAGGACCGGCAGGGTTACATTGGTGCCATGACCCAGACAGGATTGAGGTTTAGGGGGTGAGTGTAGCGGAGGCCGGGTAGTAAAGTGCTATGCATGTAAACCTCACACCTCTGACCTTTAAAGGTTATCTAGCGACAGACGCTAGAGGCCATGCTCTTTAGCATCCTTGTTAAGCCTAGTTCACACTACAGGATTTTAAACATCAGCAGATCGCTGTGCTGTTCACACTACATGACTTGACTTTGTGTCTTTTGATCTCTGTGGTGTTCACACTACGCAACACTACGTGAACGATCCACAAGAGGGGGGTCACACACTACATGATCTGACAACATCTCATTCCCCATCAGCTCATTCAAGCTACCAAACCACAGCCAATGAAAATTTGAGGGAGGAGTCGTCAGAAATAGCTGAACACTATTGGCTGCTTGTGTGCTGATTACATCACTGACAGCGTTTCAAGCTTTGGAGAAAGCATTTAAAAACAGTCAAATCAGCTGATTTATGAGCGGATTAATCACTCATCTGCAAGGTTCCAGTGGATAGATACACAGAGTTTTTAATTTTTGTAATTTTATAACTCTTTGAAATAAAACTAACATATTTATAACACCCTGCCGTTTTCTAACTATCAGTGTATTTCTTTCTGACATTGTTATTTTTTTTATTACAAAACAGTAAAGAACTGAGCATTTCTGCCTTAAATTACCATATTGGTCAAAATGACTGCATGCATGTCTGATACTTTTCGCTGTGACTTTAAATATGTGTGCATTTTCTTGCCTGGCAACTTCCTGCTAACATAAACAAAACTTTCTGATGGCAAAAACATCAATTTACTTCAGATATCTTTCAAAACAGCATATTCTGTGCTGTGAAATAGCTCCTTTTTGAAAGTGAAAATGAAAGCCAAGCCTTTAAGTGTTTTAGTATCTTAACTACATATTTATAGGCTGTATTACCAAAAAAAATATTATATTTTTAGGGTAATGGTGTCATTAAATATGATGCCAGACATTCAAAGCTTAATTTTAATATCTCAATAATAGCTTTGAATGTAAATATGTTGTGACAATTTGGCGTTTTATATGAGAACAGTCAGAATGAGCAGTATGGTAATTCTAATAGTTACAGAATTCTAGTTCCACTGTTAATATATCCTCCTCCCATGTCCGTGCTAACGCAGAATGAAGCGAGTGCACTGATGCCCATTCTGACCAATCACAGATGTTTCTGCTGAGCTCCTGAACACACAGGCATTCAGCTCATGCTGATATGCTCTCTCATTGGCTGCAGCTCGTCACTACATCTGACCACACGTGGGGTTGAGTCGGCCGACTGCTCTGGAATATTTAGCATGCTGAATGTTGGATTTCCGTCTGCGAGGTGTCGGCGACGCGTCAGCGAACCTCGTTGATGCGTTGCTCAGTAGTTCACACATAAAGAGCGGCGAGTGCCGAGCACCCGCAGATTTCTTCCCAATCACAGCCCGATCTGTCGGCGAGCTCGTTAACTTCCAAATCGGGCTCAAATCAGGCTTAAAATCCTCTAGTGTGAACTAGGCATTAGAGAAACCAACTCCCATATGGAAAGTGGCCGGTTCCATCCCAGCTCGGAGCAGGTTGGGTGGTGCAGGAGTGGCAGGGTTGCACATAGATAGTAACAAAAGAGATGAACAATGAGTCTCCACTTCCTTCCATCACTGAAAAGTAAAGCTAAAATGCTCATTTAGAGCTCTAATACTGCAGTTCTAGCTCATGATCATCACTGTGCAGAGTTTTAGAGTTATACACTAACCTCCACAGAACCCTTTCCTAAACACATGATCATTTACATGTTTATTGGACGCTTACGTAGAAGTATAGTACCCCCTGAAATGGCAGAAATCCTCTTTGGGAAACACTTTGCTTCACATCTTAATTGTTTACATCACAGGTGTTGAACTCGGTTCCTAGAGAGCTGCAACTCTGCAAAGTTTAGTTCGAACCCTAATTAAACAAACAATCTAACTAATTGAGTCCTTCAGGGTTGTTTGAAATCTACAGGTAAGCGTGTTGGAGCAGAATTGGAACTAAAGTGCGCAGAGCTGTGGCTCTTCGGGAGCGGAGTTTGACACCCAGGTTTAAATGAAGAGTTTAAGACCTATACTGCAATCAGTCACCAAGTTGCGATCCAAAGGTTTAGCTACACATTTTTTCAGGATGTACAGTTCACTTGAGCCACACTAACAGAAATGTATTTATCTATACTGCCAGATCTATTCCTAAAGATTTAAGATGGTACTATGAATGAGTAAAGTAAAATATGTCAAAATACTGTAAGTCTAGACCTCTATATAACACCGCCATTTGCCTCTGAGTAAAGATGTAGAAGCATTGACTCTCAAAGAAACCTAAAACCAATGTCAAAGAACTAGCATCAATGAAAACCGACTGACTGTGTAGTCCGATCTGGACCTAAAAGATATTTGCAAGATAGTCAACTGAAACAAGAATGCGCATTCTGCTCCTTTGTACGAGGATGCATCTTTCCACACCATCACTGGGAAACACCCATACACTCTCATTCACATGCATACACTACAGTCAATTTAGCTTACCCAATTCACCTATAGCGTATGTCTTTGGACTTGTGGGAGAAACCGTAGCACCTGGAGGAAATGAATGTGAACATGGGGAGAAACATGCAAACTCCACACAGGAATGCTAACTGACCCAGCCGGGGCTCAAACCAGCAAACAATAATCCATATTGTTTGCAAATATTTAAGAAATGCAACAAAATGACAGCAAGTATTCTTTGTGTTCCCTCTTGACTTGCATTGTTTGCTTAGTTACTTCAGTTTTGTTCTTGCACTCTGCTTAGAAACTGAACAGCCAATCAGAGCGTTCTCTTCACAGACAGCCAATACTGATTCTACATGACCAATTTTTCAAACTCTCTCTGATGCGAGTCTGAGGTGATGTGTGGAACACACCAAACAAACTTGCCTGACAGTTGACAGATGTCACACCAAAGTGGTGTGGTCCAGCCTTAAGACATGAACTTAATATTTGTACATCCATACTAACTCAAACAACCAGAGTTTGTCAGTGTATGCCAGAGTTCCTTTCTGATTTGAAATATGTCTTAATGTAAGTCCAGTCAGTCATTTTTGAGATTTCCAGATGTCCGGTTGATAAGGCTTGGCCTTGCTTGTCCGAAACAACTCCTGATCTTTTAATGCTCAATTCGTATTTTAATGATTGCAG
Seq C2 exon
GTCAGAGTGGTGCAGGAAACAACTGGGCCAAAGGTCACTACACAGAAGGAGCAGAGCTGGTGGACTCAGTACTGGATGTTGTGCGCAAGGAGGCTGAAAGCTGCGATTGTCTGCAAGGATTCCAGCTCACCCACTCTCTCGGCGGAGGCACTGGCTCTGGCATGGGCACCCTGCTCATCAGCAAAATCCGTGAAGAGTATCCCGACCGCATCATGAACACCTTCAGCGTGGTGCCCTCACCCAAGGTGTCCGACACCGTGGTGGAGCCCTACAACGCTACACTGTCCGTCCATCAGCTAGTGGAGAACACTGATGAGACATATTGCATCGACAATGAGGCGCTGTATGACATCTGTTTCCGCACGCTCAAGCTAACCACACCAACCTACGGAGACCTCAACCATCTCGTCTCAGCCACCATGAGTGGCGTCACCACCTGTCTCCGCTTCCCCGGCCAGCTCAATGCTGATCTTCGCAAACTAGCCGTCAACATGGTGCCCTTCCCACGTCTCCACTTCTTCATGCCTGGTTTTGCACCACTCACCAGCCGAGGCAGCCAGCAGTATCGCTCACTCTCCGTTCCTGAGCTCACACAGCAAATGTTTGATGCCAAGAACATGATGGCTGCCTGCGACCCACGTCACGGCCGCTACCTGACCGTAGCCGCAGTTTTCCGTGGACGCATGTCCATGAAGGAGGTGGATGAGCAGATGCTGAACGTCCAGAACAAGAACAGTAGCTACTTCGTCGAGTGGATCCCCAACAACGTCAAGACTGCCGTCTGCGACATTCCACCTCGTGGGCTCAAAATGGCCGCAACCTTCATCGGCAACAGCACGGCCATCCAGGAGCTCTTCAAACGTATTTCCGAACAATTCACCGCTATGTTCCGCCGCAAAGCTTTCCTGCACTGGTACACCGGAGAGGGCATGGATGAGATGGAGTTCACAGAAGCTGAGAGCAACATGAACGACCTGGTGTCTGAGTATCAACAGTACCAAGATGCCACCGCCGAAGAGGGTGAGTTCGAAGAGGAAGGCGAGGAGGAGGTCGCATAAATTGCCGCAACCTGCCACATTGGTGTTCCCTTCACTCCATCACCCACATTTTTATCTTCCTCACCACAGACCAATGCTCTCCAGAACAATAAATGGGTTTTCACATCCAGAATTCACTATTGACTGTGTTTCCCCCATCCCACCAGTGATATTTTGAGGAGTTGTGAACATTTGGTTTGGTTTTGTGTTTCTAACTATTGTGAATGCATGCCATCAAATTTCCCCCTCACATTCAAGTGAAATGAAAGTGATTTTAACTGTGAAGCCATCAGGTTTGAGAAAGATGTAACTACTGTCAGTGTTAATCTGAATAAAGACCAATTCTATATCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104436:ENSDART00000161507:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.7=100)
A:
NA
C2:
PF0009120=Tubulin=PD(59.0=37.1),PF0395312=Tubulin_C=WD(100=34.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]