DreINT0180568 @ danRer10
Intron Retention
Gene
ENSDARG00000093176 | zgc:77118
Description
zgc:77118 [Source:ZFIN;Acc:ZDB-GENE-040426-2211]
Coordinates
chr15:35257363-35257968:-
Coord C1 exon
chr15:35257914-35257968
Coord A exon
chr15:35257748-35257913
Coord C2 exon
chr15:35257363-35257747
Length
166 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
GTTTTTCACCTTCTCCCCAGTTT
3' ss Score
8.36
Exon sequences
Seq C1 exon
TATGTTCGGGTCTTTTGACAGTGATGGAAAGGTGATTGATATGGAAAATCAGGAT
Seq A exon
GTGAGTGAATGCATTTTACTCTTTTTCAGTATTTTGTAATATTACTTTATTTAAAATACATCCATATTGTTCTTCAGTTTATTTAACAATGCACGTTTAGTTTGTACTTCCTTAATTTTTGCTGGTGCTGTTTGGTTATGCTAACCGTTTTTCACCTTCTCCCCAG
Seq C2 exon
TTTTATGTAAGGGATACTTTTGGCCTGAAAACACTGAAATCCCAAAGTGCCGTGTGGAAGTGTATCGTTCCTGGTGTTAAACACAATTTCTGGCCCTCAGACCCCAGGGTCTTCCAGAACTGCATAGAAAAGTGGCTCACGTAATCACAATCCTGTACGTCAATTCTCAAACTCAATTCCTGGAGGGCCGCAGCTCTGCAAGGTTTAGCTCCAACCATCCCCAACCCACTTCTGCTTTTCAGATCAGCTGTTTTATTAGGGTTGGAGCTGTGCCGAGCTGACACCCTCCAGGAATTAAGACTTGCTGTATGCTTGAAGTAATGTGTCTAGATTTGTACTCCTTTTTAACACAAATAAATAAACTATATTTTTTGTTATTTGAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093176:ENSDART00000007636:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(7.3=100)
A:
NA
C2:
PF0208910=Palm_thioest=PD(9.0=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGTGATGGAAAGGTGATTGA
R:
TGGAGCTAAACCTTGCAGAGC
Band lengths:
253-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]