DreINT0181420 @ danRer10
Intron Retention
Gene
ENSDARG00000087536 | znf407
Description
zinc finger protein 407 [Source:ZFIN;Acc:ZDB-GENE-110411-123]
Coordinates
chr16:6802041-6805564:+
Coord C1 exon
chr16:6802041-6802219
Coord A exon
chr16:6802220-6804888
Coord C2 exon
chr16:6804889-6805564
Length
2669 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
CTCTCTTGTGTTTGTTGCAGGAA
3' ss Score
12.02
Exon sequences
Seq C1 exon
ATCTAATTGCGCAGAGAACATCCGTAAACACATCCTGCACACAGGCAAGCACGAGGGGGTGAAGATGTATAACTGTCCTAAGTGCAGCTATGCCACCAATGCCCCGATGGACTTCAGAAACCACCTTAAAGAGACTCATCCCGACATCGAGAACCCAGATCTGGCTTATCTACATGCAG
Seq A exon
GTAGACACACATTTTCAAAGGAACACTCCAGTTTTTTTCAAAATAGGCTCCTTTTACAAATCTTCTAGAGTTAAACAGGTGAGTTTTAGCATGTTTGAATCCATTCAGCTCATATCCGGGTATGACAGGGGAACTTTTAGCTTAGCTTAGCTTAGCATAAATCATTGAATTAGATAAGACAAATGAAAAAAAGTTAATAGAGTTTGATAATTTTCCCATTTAATGTTTGAAACTTCTGTAGTTAGTTAAACTGTGTACTAAAATCAATGCAAATAAACTATACTCTCACTCTGGCATTATAGTCAAGGGAATTTGCTGCTCTACCATGGCTGCAGCAGGCACAATAATATTACCTAGTTACCTAGCTGTGGACTATTTTCAGGAATGCATATCATCACAATAGTCCCGAAAGTCCCTGACCCATGGGATCACTGTGCCTGTTTTAGAATCACATATTGTGCCAACTTATTAGTATTAAAGTTGCCATGAAATCACAATTTACTCTTCTTAATTTTACATGTGTATAGTAAAACTGAAAGGGAAAGTCGTGACAAGTGGTATGGTGACCCACACTGGGAAATCGAGTTCTGGATTTAACCCATCCAATTGCATACACACAGCAGTGAACAAACAGACCCTGAACACACACCTGGAGCAGTGGGCAGCCGTTGCTGCGGCACCTGGGTAGCAGTTGGGGGATTGGTGCCTTTCTCAAGGGACTCACCTCAGCTGTGGTATTGAGGGTGGCGAGAGCGCTGATGATTCACTCCCACCACCTACAATCCAAGTTTAAATCCAACTTTCAAACCATTAGACCATGGCTGCCCCATAAAGTAGTACAAGTATTACTAGTACTAGTAGCAGTAGTAAAAGTAGTAGCAGTAGCAGCAGTAGTAGTAGTATTAGTAGTAGTAGTAGTTTTAGTAGTAATAGTTGTAGTAATAGCAGCAGTAGTAGTAGCTGTAGTAGTAGTAGTAGCAATAGTTGTAGTAGCAGTAGCTGTAGTAGTAGTAGTTGTTGTTGTTGTTGTTGTAGAAGTAGCAGTAGCTGTAGTAGTAGTAGTTGCAGTAGTAGTTGTAGTGGCAGTACCAGTAGTAGTTTTAGTGTTAGTAGGAGTAAAAGTAGCAGTAGCTGTAGTTGTAGCGGCAGTATTAGTTGTAGTGGCAGTAGCAGTAAAAGTAGCAGTAGCTGTAGTAATAGTTGCAGTTGTAGTGGCAGTATTAGTTGTAGTGGTCGTTGTAGTTGTAGTGGCAGTATTAGTTGTAGTGGCAGTAGTAGTTGTAGTGGCAGTAGCAGTAAAAGTAGCAGTAGCTGTAGTAATAGTTGTAGTTGTAGTGGCAGTATTAGTTGTAGTGGCAGTAGTAGTTGTAGTGGCAGTAGCAGTAAAAGTAGCAGTAGCTGTAGTAATAGTTGCAGTTGTAGTGGCAGTATTAGTTGTAGTGGCATTTGTAGTTGTAGTGGCAGTATTAGTTGTAGTGGCAGTAGCAGTAAAAGTAGCAGTAGCTGTAGTTGTAGTGGCAGTAGTAGTTGTAGTGGCAGTAGCAGTAAAAGTAGCAGTAGCTGTAGTAATAGTTGCAGTTGTAGTGGCAGTATTAGTTGTAGTGGCATTTGTAGTTGTAGTGGCAGTATTAGTTGTAGTGGCAGTAGTAGTTGTAGTGGCAGTAGCAGTAAAAGTTGCAGTAGCTGTAGTAGTAGTTGCAGTTGTAGTTGTAGGGGCAGTATTAGTTGTAGTTGTAGTGGCAGTAGCAGTAAAAGTTGCAGTAGCTGTAGTAGTAGTTGCAGTTGTAGTTGTAGGGGCAGTATTAGTTGTAGTAGCAGTTGTGGTTGTAGTGGCAGTTGTAGTTGTAGTGGCAGTAGCAGTAAAAGTAGCAGTAGATGTACTAGTAGTAGAAGCTGCAGCAGTAATAATAGCAATAGTAGTAGTAGTAGTAGTAGTAGTAGCAGTAGCATCATAGCAATAGTAGTAGCGATAGTAGTTGTAGTGGGAGCAGTATTTGTTGTTGTCGTTGTTGTTGTTGTCGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGGCATATTAGTGGGTGTCTCGTTTCTGCTCTCAATTTGTCCATTCGTCAATCTTCCTTCATTTTGTTAACACCCTTGTTCAACAATCCAATCTGTTTCTAAAGAATAAAATCATGACAGCCTTACGTTTTATTTTCTAATATCAGGACTATTTCAAGCAAATGTACATCACAATAGCAGAGACGCACATTATTTAACTTAACTTCCATTCCATGGAGTCTTTTAAGGAATAGCTCACCCAAAACTGCAAATTATGTCATTACTTAATCACCCTTTACTTGTTCCAAACCCGTTTTACTTTCTTTCTTCTGTCGAACAGAAAGGAAGATCTTTTAAAGAAAGCTGAAATCCTGTAACCACTGATGTCCATAGGATTTGTTTTTCCGACTATAAAAGATAATGGTGACAGGTTTTGAGCTTTCTTCAAAATATCTTTGTTGATATAAAGGTTTGGAACCACTTGAGGGTTAGTAAATAGTGAGTAAATGTTCATTTTTGAGTAAACTATCTATTTAAATGACACCTCAGTTTCTCGTTAAGTGACCATGTTGAGTCAAAGAATGCATTTAACATCCCAATATGTCTTTCTACTCTCTTGTGTTTGTTGCAG
Seq C2 exon
GAATTGTATCCAAGTCCTATGAGTGTCGTCTGAAGGGTCAGGGGGCATCTTTTGTCCAGGCAGAAACTGTGTTTTCCCCTGAGGAGAGCGAACTGGGTTCTGAGGCAGTTCAGCAGGTCATCATCATCCAGGGCTACAGTGGAGGAGAGGTGGCCATCGATCAGGCTCTGGAGCAGTCGGCCGCTGCCACTTTACAGACCCTCGCCATGTCCAGCCAGCTGGCCGAAGTGCTGCACATCACCGAGGACGGGCAGCTCATCACATCCGGTCAGGAAGTCTCTACAGGAGGCCAGACCACTCAATATGTCCTGGTGGAGTCATCCGGAGAAACCGTAGGAGAAGGAAGACCAGAAGTGGAGGCTGGACACAATGCATCTGAATCGTCTTCTGCTCTGGATGCTTTGCTTTGTGCTGTGACGGAGTTGGGCCAGCAGGCCTGCGCTGCTGAGGGAGAGATTTCCACCACTGCCGCGGCAGTGTCTGAAAGTCATCCAAAAGTGACGACCTCTCCAGCACAGAGCCAAAATGACGGGCAGGTATACGAGGAGAGGACAGAAGTGGGCATGGTGGCTCAGGTGGTGGGGTCTACCCATGAGCAACCGTCCGAGGAGATGCAAGAGGTGCTCCAGTTTGCAGCCAGTCAGCTGATGATGAAGGAAGGACTCACTCAAGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087536:ENSDART00000148479:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.445
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(11.5=4.9),PF134651=zf-H2C2_2=WD(100=45.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]