GgaALTA0000229-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000000635 | HIVEP3
Description
NA
Coordinates
chr23:846780-851837:+
Coord C1 exon
chr23:846780-847898
Coord A exon
chr23:851692-851722
Coord C2 exon
chr23:851723-851837
Length
31 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTGCTCTTTTGGGGAGATAGGTT
3' ss Score
-0.15
Exon sequences
Seq C1 exon
CCCGGTCCGGTTCTCCAAGCTTTGAGGCGCTGGAGGAGTATCAGCAGCCAGCTGGCAAGCAGCCCCTTGGCAAGGCACCTTTACAAAGCGTGAAGAAAGAAGACTCCAAAGAGCCAGTGGAGCAGCCTCCACCAAGCCCTCCAAGCCCTGCACCTCTGTCCGAGGTCCCTTCAAGTGCAATGAAGTCTCGAGAAGGTACGGATATGAAGAAGGTACTTCAGTTCCCCAGTCTCCACACAACCACTAATGTCAGTTGGTGCTATTTAAACTACATAAAGCCAAATCACATCCAGCAAGTCGACCGGCGGTCTTCAGTGTATGCCAGCTGGTGTATTAGCTTGTATAACCCCAACCTTCCGGGTATATCCACTAAAGTCGCCCTGTCCCTCCTGAGGTCCAAGCAGAAGGTGAGCAGGGAAACCTACACCATGGCTACTGCTCCACGGCCAGAGGCAGGCAGGCTTGTCCCGTCCAGCTCCAGGAAGCCCAAAATGACAGAG
Seq A exon
GTTCATTTGCCTTCGCTCCTTTCTAATGAAG
Seq C2 exon
GTCGAAAAGAAATAACTAGAGCTGAGAAGGAAGAGGATAAAAGAGGAAAACCAGAAGAAGAGGCTGTTGTAACCAAAAGAGGGGAGCCAGTCAGGATCAAGATCTTTGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000635-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.555 A=NA C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGGAAGCCCAAAATGA
R:
TCTTGATCCTGACTGGCTCCC
Band lengths:
128-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]