GgaALTA0000335-3/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11153416-11154576:+
Coord C1 exon
chr17:11153416-11153519
Coord A exon
chr17:11154468-11154518
Coord C2 exon
chr17:11154519-11154576
Length
51 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CCTTTTTTTTTTTCTTTCAGGTA
3' ss Score
13.93
Exon sequences
Seq C1 exon
ATGATACAACAGGAACCTTTTCCATCTATACAGTTTACCAAGGGCATGAAATTATGTTCCATGTTTCGACAATGCTACCATATTCTAGAGAGAACAAACAGCAG
Seq A exon
GTAGAAAGGAAGCGGCATATTGGAAATGACATTGTCACTATCGTATTTCAG
Seq C2 exon
GAAGGAGAAGAGACTGCTCCAGCATTCAAGCCATCCATGATTCGCTCTCATTTTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-18-18,18-17,18-16-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=FE(17.9=100)
A:
NA
C2:
PF0214510=Rap_GAP=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTATACAGTTTACCAAGGGCA
R:
TGAGAGCGAATCATGGATGGC
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]