GgaALTA0000346-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000853 | SLC2A8
Description
solute carrier family 2, facilitated glucose transporter member 8 [Source:RefSeq peptide;Acc:NP_989706]
Coordinates
chr17:10385438-10387300:+
Coord C1 exon
chr17:10385438-10385597
Coord A exon
chr17:10387094-10387223
Coord C2 exon
chr17:10387224-10387300
Length
130 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TTTTAACTTGTTTTTTGAAGTCT
3' ss Score
4.98
Exon sequences
Seq C1 exon
AGTGCAAAACAAGAAGCTGTACCTGGCCACGTTCGCTGCTGTCCTGGGACCACTTAGCTTTGGCTTCGTGCTAGGCTATAGCTCACCTGCTATCCCAGAGCTGAGGAAAATCGACAATCCGAAATTACGATTGGACAGCAATCAGGCATCGTGGTTTGGG
Seq A exon
TCTATAGTAACATTAGGAGCTGCTGCTGGAGGAATACTGGGAGGCTACCTTGTGGATAAAATTGGGAGAAAACTGAGTCTGATGCTGTGTTCAATACCATTTGTCTCTGGATATATAGTTATTATTTCAG
Seq C2 exon
CTCAGAACGTCTGGATGCTTTATTTTGGACGAATACTAACTGGCTTAGCCAGTGGAATTACTTCACTTGTTGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853-2-7,2-6,2-5,2-4-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(10.0=83.3)
A:
NA
C2:
PF0008319=Sugar_tr=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAACAAGAAGCTGTACCTGG
R:
TGGAACAACAAGTGAAGTAATTCCAC
Band lengths:
234-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]